Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1253 ATGGAAGTTGCAAAGGTGACTGTGAAAGCTGTGGCTCTGATCGCCGGAGATAACAACGTGAGAGGAGCTCTTCAGTTTGTGCAACACCCCGACGGAACTACTCATGTAAAAGGGAGAATCACTGGGTTGTCCCCGGGCCTTCACGGATTCCATATTCACGCTCTCGGGGACACCACTAATGGCTGCAATTCCACTGGCCCTCATTTCAATCCATTCAAGAAAGACCATGGAGCTCGAACAGATGGTGAGCGTCATGCTGGAGATTTGGGTAACATTGTTGCTGGCCCGGATGGGGTTGCTGATGTTTCAATCACAGACGGACAGATACCACTAAGTGGAGTTCATTCCATACTTGGGAGGGCAGTTGTTGTGCATGCTGACCCTGACGATCTTGGTAGAGGCGGACATGAACTAAGCAAGACCACTGGTAATGCAGGTGCAAGAGTAGGATGCGGTAATGCTTCTCTTCTACAATCAATTTCACTGTTGGCTGCACATAGTTGCTATATACACACACATTGGGCAATTGATTTCTCATCCAGTTGCGGTCATGCAATAACTGTTAGAACTTTGAAGCATACTCTCTTCCTTGCATCATGGAGCCTTTCAGCCATGCCTAAGAGACTCTCTGTCTTTTATCTCCGAACCTTACGGAAGACAATTGTATTGTAA 672 0.4747 MEVAKVTVKAVALIAGDNNVRGALQFVQHPDGTTHVKGRITGLSPGLHGFHIHALGDTTNGCNSTGPHFNPFKKDHGARTDGERHAGDLGNIVAGPDGVADVSITDGQIPLSGVHSILGRAVVVHADPDDLGRGGHELSKTTGNAGARVGCGNASLLQSISLLAAHSCYIHTHWAIDFSSSCGHAITVRTLKHTLFLASWSLSAMPKRLSVFYLRTLRKTIVL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1253 223 CDD Cu-Zn_Superoxide_Dismutase 8 151 IPR001424 GO:0006801|GO:0046872
Lele14g1253 223 FunFam Superoxide dismutase [Cu-Zn] 6 158 - -
Lele14g1253 223 PRINTS Cu-Zn-superoxide dismutase family signature 49 71 IPR001424 GO:0006801|GO:0046872
Lele14g1253 223 PRINTS Cu-Zn-superoxide dismutase family signature 104 126 IPR001424 GO:0006801|GO:0046872
Lele14g1253 223 PRINTS Cu-Zn-superoxide dismutase family signature 129 155 IPR001424 GO:0006801|GO:0046872
Lele14g1253 223 PRINTS Cu-Zn-superoxide dismutase family signature 85 94 IPR001424 GO:0006801|GO:0046872
Lele14g1253 223 SUPERFAMILY Cu,Zn superoxide dismutase-like 8 155 IPR036423 GO:0006801|GO:0046872
Lele14g1253 223 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 5 157 IPR024134 GO:0005507
Lele14g1253 223 ProSitePatterns Copper/Zinc superoxide dismutase signature 1. 49 59 IPR018152 -
Lele14g1253 223 Pfam Copper/zinc superoxide dismutase (SODC) 20 153 IPR001424 GO:0006801|GO:0046872
Lele14g1253 223 Gene3D Superoxide dismutase, copper/zinc binding domain 5 161 IPR036423 GO:0006801|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1253 Lele-ChrLele14 21713813 21716611 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1253 14 21713813 21716611 Lele15g1099 15 6366955 6368279 hybridization
Lele14g1253 14 21713813 21716611 Lele16g1124 16 6332931 6334893 hybridization