Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1236 ATGCCAAGAAGCATGAGTTCTGCAAAAGAATCGAAAAGAGGGAGAGAAAAAATTGTAAAACAGACAGTCCTCTCAAAGAAGAGACCTGGTTACGTAGAAATTATCAAGTACTTCTGTTCTTTTATATCTGCCGACAAAAAACTGAGGGCCATAAAGGGTGCACTGACACAGAATTGTGACACCAAGGTTTGGTTTTCTTCGTCTTCCCATCTCTCTCTTGAATTCAAAAAAATACACTTGACGGACATGGATGTTTGCCGGAATGCATCAGTTGCCGGCGACTGCGAACAAGAGCAGGTCCTACTGTCTTCTTACCCAAAGCTTTCTACCTTCTCAACCACTCTTGACGACCTCTTCTCTTCTCATAACACGGAAGTGGATGTTGGCTTAGAATGGCTTTCTGTATTTGTGGAAGACTGTTTTTCCAGCTCAGCATGTTGCCTCTTGGCACCTACTGATGCCCTAAACACAGAGGCAAACTCTAAACCCTCCGTACAGTTACATAGAACCCAGCAGCAAAAGCAGTCTCCTCTGCAAAATTTTGTGGTGCCAGGAAAGGCAAGAAGCAAGAGGAAAAGGCTTTCAGCCCCTAGAACCAATGACCCATTAAGCAGCTGGTCACACCATTTGAACCCAAAAAATGAACCCATAACTTCAGACCCTCCTCTTCTTAAACAAGCCTACTGGTTAGCTGATAGTGAACTCATGGTACCCAAGAAGGAAGATGAGCAAGTAGCAACAAAGGATGAAGAAGCAGAGCAAGAGGTGGTGGAAGAGAAGAGGACTGTGAGGAAGAAGGAGAGTTTTGAGAGCTTAGTCTCAGAGTGTGAAGAAGGTAGCAATGGGCAGAATCAAATGCCAAGAAGGTGTACCCATTGCCTTGCACAGAGGACCCCACAATGGAGGGCCGGGCCATTGGGTCCAAAAACACTATGTAATGCATGTGGAGTGAGGTATAAGTCTGGTAGATTGCTTCCAGAATATAGGCCAGCCAAGAGCCCTACTTTTGTAAGCTACTTGCACTCCAATTCCCACAAAAAGGTCATGGAGATGAGAATGGCTGTTCTGTCTTCTGTTCCTAAATTCAGGAAACAGGCATATTATATTGTGAAAGCTGTGACTGCAGAGTGTAAAAAGAAAGGCAAGTATAGTGATCTGCTTATTGGTTTCGATAATATTACTGGAGGTTCTATATTCTTTAAATATAGGTGGCTTACGCCTTTTAGAACATCGCCTTTACCTTTGGTGCAAAGGTTTGGGTTGATCAGGCTTTTCTCAGTTTTTATTTCTTCTCATGGTAAAGATGGGAACCTTAACTCGGCGAGCTCCATCTCAAAGTTAATAAAATCATTGCGTGCAGGGTTATTGAGCGTGGAAAAGCAGCCCCATCCTTTGCATCATATGATCTCAATTGCTTTGTCTGCCCCTGAAAGAACGACACAGGGGACTGAATCATTTGACTTTGTCAATCACACACTGTTTAAAGTTTTGTTCATGTCAGGTGTGAACAGAGTAGCTCCAATTCAGACATAA 1533 0.4344 MPRSMSSAKESKRGREKIVKQTVLSKKRPGYVEIIKYFCSFISADKKLRAIKGALTQNCDTKVWFSSSSHLSLEFKKIHLTDMDVCRNASVAGDCEQEQVLLSSYPKLSTFSTTLDDLFSSHNTEVDVGLEWLSVFVEDCFSSSACCLLAPTDALNTEANSKPSVQLHRTQQQKQSPLQNFVVPGKARSKRKRLSAPRTNDPLSSWSHHLNPKNEPITSDPPLLKQAYWLADSELMVPKKEDEQVATKDEEAEQEVVEEKRTVRKKESFESLVSECEEGSNGQNQMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVLSSVPKFRKQAYYIVKAVTAECKKKGKYSDLLIGFDNITGGSIFFKYRWLTPFRTSPLPLVQRFGLIRLFSVFISSHGKDGNLNSASSISKLIKSLRAGLLSVEKQPHPLHHMISIALSAPERTTQGTESFDFVNHTLFKVLFMSGVNRVAPIQT 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1236 510 Gene3D - 280 353 IPR013088 GO:0006355|GO:0008270
Lele14g1236 510 MobiDBLite consensus disorder prediction 160 182 - -
Lele14g1236 510 PANTHER GATA TRANSCRIPTION FACTOR 94 356 - -
Lele14g1236 510 MobiDBLite consensus disorder prediction 160 219 - -
Lele14g1236 510 Pfam GATA zinc finger 290 324 IPR000679 GO:0006355|GO:0043565
Lele14g1236 510 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 285 348 - -
Lele14g1236 510 MobiDBLite consensus disorder prediction 198 214 - -
Lele14g1236 510 ProSiteProfiles GATA-type zinc finger domain profile. 284 320 IPR000679 GO:0006355|GO:0043565
Lele14g1236 510 ProSitePatterns GATA-type zinc finger domain. 290 315 IPR000679 GO:0006355|GO:0043565
Lele14g1236 510 CDD ZnF_GATA 289 336 IPR000679 GO:0006355|GO:0043565
Lele14g1236 510 SMART GATA_3 284 338 IPR000679 GO:0006355|GO:0043565
Lele14g1236 510 FunFam GATA transcription factor 280 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1236 Lele-ChrLele14 21626156 21630638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1236 103 352 C2C2-Gata Transcription Factor Family AT4G32890 38.610 1.94e-40 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele14g1236 GATA 2.7e-14 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0676 05 3989437 3990697 Lele14g1236 14 21626156 21630638 CCT
Lele14g1236 14 21626156 21630638 Lele15g1115 15 6458457 6459955 hybridization
Lele14g1236 14 21626156 21630638 Lele16g1146 16 6421769 6423707 hybridization