Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1190 ATGTCCATCTTGCCCTCACAAGCTTCAACCTCATCGTCTTCTCAATCTCCGATATCTCCAAACCCTAATCCCCAACATGGAAACCTCTCTCACTGGTCTCATTCTCCTCCATCCGTCTTCTCTCCTCTCCTTCAAGTTCCATCCTTCAGATCTCTCCGGATCTCCGATTCACCATCTCCCGTCGCTATGCCCGAAGTCGATTCAGGCCCATCGACTCCAGCAACAGAAGATTCTGGCAGACCTTCCGGAAAGGTGACTTTGTTGGGATCTCCAAGTGGTATGAAGAGTTCACCTCACCAAAACTCTAGAGTACAATCCCAAGGTCAGTCAAGAAGACGGGCAACTAGATCATCCCAATCAGCAGCGAGGATGACAGGAACAGTTTCTTCTCCTGGAGGTCAGCAAAGTACTAGGTCTTTAAATCCTCATGGGATCACCCCTTCAGTGGGAAGAAAATCTCAGATGGTTAATGGTAATCACTTGCTAAACTTTCGTTATGATCCCATATCTTGTCCTCAAGCAAGGGGTCCTCCTCCTCCACCAACAAGAAGGCAGCAGAAGAAAAGGCCATACAACAAAGATTTATTTTTACAAGCAAATTACAAATTCGTGGTGTTGGATTCAGGAGACTATTCGCCAGAGTCTTTGGACCCGGATAAAATGCTACAGTGGGAAGATGTTGTATGTGTGTGGTATTCCACTCCATTCTTGGTTCAGTGTCCAATTTGTTTGGAGTATCCTTTTTGTCCACAAATAACCTCTTGTGGACATATTTTTTGTTTCCCTTGTATCTTACAATATTTGATGATGGTTGAAGGGGATAACAAAGGTGATTGCTGGAAAAGGTGTCCCTTATGTTTTGTCATGATATCTGTGAAGAATTTATATAGCATCTACATTGAAAATGTTGAGCAGTATCAAGTGGGAGATAGCATCGAGTTCAGACTTTTAACTCGGAAAAAGGAATCTTGTACTCTGTCTGATAAAAATAAGGAGACGGATGTCTTATCATGTGATGGTAACAATTTATGTGACCCATTTTCAAAGTTCACACTCACATCAGATGTAGATCTCTCAGTTAGACATGCAATATCAGATCTAGATTGTTGGCTAGCTAAAGCTGATTCCGGTCTTGTTGATGACTTGGAGAAACTTCCATATGTTTGTGCTGCGTTGCAACAATTGGAACAGAGGAAGAAGTATTGGAATGAGCACAGGGCTTGTGATGTTGGAAAATCGTCTAGGCTTATTGATTGTGGACATAACAAACCAGCAACAGTCGTAAATGGCACTGATGTTGATGATGAAACCCGGTCTTATGGATCAGGACCTTCCTCTACAGATTCCCATGACCAAAGCAAGGGTATAATAATGGATAATTCAAATGCAAGATTCTGTCCAGATCAAACTTCGGATGTGGAGAGGAAAGTATTAGATCAAGAAATTAACCCATCTTTCTATGAGGAGAAAATTGATATTCAAAGGCATCCAAATGGTTTTGGAGATTCAAAGGAGAATGACTCGTACAATTTTTACCAGGCTGCTGATGGTCAGCATCTCATACTGCATCCCCTAAACGTGAAGTGTCTCCTTCACCATTATGGAAGCTATGATATGCTTCCACACAGAATACGTGGAAGGATTCTGCAATTGGAGACAGTCACTCAGTCAGTGGCAATGAGGAGGCGGTACCGATATTTGAGTCATTTTCCTTTGACTGTGACATTTCAGCTTTGTGAAATTGATTTGAGTGAGATGCTGCCCTCTGAATCCCTGGCCCCATTCATCGATGAATTGAAGAAGCGGGCAAACCAGAGGAGGCAACTTGCAAAGAAGGAACGAAAAGAGAAAATCAAGGCTGAAGTTGCTTCTGCGCATTCTGTTCACATACCAACCAGTTCTCAGCTGATGTCTCGTGACGATTCTCCACCATTCTCCATGGATGATTTTGAAGCTCTGGGGAATTCGACTGTATCATTAAGTCCTCCTGTTGTTGGGGGGAGAAGTTTGTTTTCAAGTGTTACAAGACTGGGTTTTGCTGCTGGTCATGATTCTCCATCCTTGAACATTCAAGAAACTAATGGTCTACACAATCATAATACGACAAGTGATTCTTCTGGCTTGACAGGTCTGAGAAATGTGGAGACATCATCATTTGCCAATGTTATATCTAGAGCAGAGTCTCTTAATAGCTTAAATGCACCCAAGACAAGTGACTTGGGTAAGAAGGGGAAGAAACCAGCTAGAGTTCTTCTGTCAACAGCCGGGGGTAGGCGTTACTGA 2283 0.4279 MSILPSQASTSSSSQSPISPNPNPQHGNLSHWSHSPPSVFSPLLQVPSFRSLRISDSPSPVAMPEVDSGPSTPATEDSGRPSGKVTLLGSPSGMKSSPHQNSRVQSQGQSRRRATRSSQSAARMTGTVSSPGGQQSTRSLNPHGITPSVGRKSQMVNGNHLLNFRYDPISCPQARGPPPPPTRRQQKKRPYNKDLFLQANYKFVVLDSGDYSPESLDPDKMLQWEDVVCVWYSTPFLVQCPICLEYPFCPQITSCGHIFCFPCILQYLMMVEGDNKGDCWKRCPLCFVMISVKNLYSIYIENVEQYQVGDSIEFRLLTRKKESCTLSDKNKETDVLSCDGNNLCDPFSKFTLTSDVDLSVRHAISDLDCWLAKADSGLVDDLEKLPYVCAALQQLEQRKKYWNEHRACDVGKSSRLIDCGHNKPATVVNGTDVDDETRSYGSGPSSTDSHDQSKGIIMDNSNARFCPDQTSDVERKVLDQEINPSFYEEKIDIQRHPNGFGDSKENDSYNFYQAADGQHLILHPLNVKCLLHHYGSYDMLPHRIRGRILQLETVTQSVAMRRRYRYLSHFPLTVTFQLCEIDLSEMLPSESLAPFIDELKKRANQRRQLAKKERKEKIKAEVASAHSVHIPTSSQLMSRDDSPPFSMDDFEALGNSTVSLSPPVVGGRSLFSSVTRLGFAAGHDSPSLNIQETNGLHNHNTTSDSSGLTGLRNVETSSFANVISRAESLNSLNAPKTSDLGKKGKKPARVLLSTAGGRRY 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1190 760 Coils Coil 596 620 - -
Lele14g1190 760 ProSitePatterns Zinc finger RING-type signature. 255 264 IPR017907 -
Lele14g1190 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 321 IPR013083 -
Lele14g1190 760 MobiDBLite consensus disorder prediction 1 55 - -
Lele14g1190 760 SMART ring_2 240 286 IPR001841 -
Lele14g1190 760 MobiDBLite consensus disorder prediction 89 153 - -
Lele14g1190 760 Pfam Zinc finger, C3HC4 type (RING finger) 240 286 IPR018957 GO:0046872
Lele14g1190 760 PANTHER RING FINGER 10 FAMILY MEMBER 94 760 IPR039739 -
Lele14g1190 760 ProSiteProfiles Zinc finger RING-type profile. 240 286 IPR001841 -
Lele14g1190 760 MobiDBLite consensus disorder prediction 1 153 - -
Lele14g1190 760 MobiDBLite consensus disorder prediction 432 454 - -
Lele14g1190 760 MobiDBLite consensus disorder prediction 168 189 - -
Lele14g1190 760 MobiDBLite consensus disorder prediction 428 454 - -
Lele14g1190 760 MobiDBLite consensus disorder prediction 734 760 - -
Lele14g1190 760 SUPERFAMILY RING/U-box 239 293 - -
Lele14g1190 760 CDD RING-HC_RNF10 240 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1190 Lele-ChrLele14 21347361 21352410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1190 114 694 C3H Transcription Factor Family AT3G26730 54.908 0.0 622