Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1102 ATGACTTCTTCGACTTCCCTCTCTGTGCTTCTCTTGACCACAGTCCTGTGCTGTGCGTCTGGTTTTGAGTTCCAAGTGGGAGGATCAGCAGGGTGGGTGGTCCCACCTGCGAATCAGACCGACATCTACCATAAATGGGCTTCACACAACAGGTTCCAAGTTGGTGACTCCATACGGTTTAAGTACAAGAAGGACTCGGTGATGGAGGTGGATGAAGAAGGTTACAAGAACTGCAATTCCAGTCACCCAGACATGTTCTCCAACAATGGAAACACAGTGTTCAAGTTCGATCATGCGGGCTCTTTCTACTTCATCAGTGGTGCGTCTGGGCATTGCCAGAAAGGACAGAAGATGATAGTGAGGGTGCTCAATCTGGAGGAAGAGTCTCTTCCCAATCATCACCATGATAACTCTTCTTCTTCTGCTGCTGCTGCTTTCCGTCATCAAGTTTCGCCGGTCGTCCCCATCGTCTTCTTTGTTTTCGCCTTCGTCGCTTCTCATAGGATCAAGACTGGATCATTCCTCAAATCCATAAGCATTTTGATTTTTGTCACTTCCAGTTCCCGTGCCTTCCACGAGCATCGTCTCTCTTTGCTCTATTCTCTCTTGCAGACACCAATGGCGACGAGTTTGGTCAGAAGGTCACTGTCTAGGGTTTCATCGTCGCTGGCGTCGAAGTTGCTGTGCGCTCGAGCGCACGCCTCCGAAGCTCAAGCCCAGCAGGTGGAGCCCACCGCTCGCGACTCCGCCGCGTTCAAGACATTTCAAATCTACCGATGGAACCCCGAGAATCCTTCCAAGCCTCAGCTTCAGGAGTACCAGATCAATCTACGCGAGTGTGGGCCCATGGTCCTCGACGCCTTGATCAAAATCAAGAACGAGATGGATCCCACCCTCACTTTCCGCAGGTCCTGCCGGGAGGGAATCTGCGGCTCCTGCGCCATGAACATTGATGGATGCAATGGCTTAGCTTGCTTGACCAAGATCCCTACGAGCTCTGAAACCACGATCACTCCTTTGCCTCATATGTTCGTCATCAAGGATCTCATTGTGGATATGACCAATTTCTACAATCAGTACAAGAGCATTGAACCCTGGTTGAAAAGGAAGAACCCACCCCCCGTTCCTGGTAAGGAGGTACCTCAGAGCAAGAAGGATAGGGCTAAGCTCGACGGGATGTACGAGTGCATATTGTGTGCGTGCTGTAGCACATCCTGCCCTAGCTATTGGTGGAACCCCGAGTCGTATCTAGGACCCGCAGCTCTGCTCCACGCTAATAGGTGGATAAGCGACAGTCGTGATGAGTACACGAAGGAGCGATTAGATGCCATTAACGATGAATTCAAGCTCTATCGCTGCCACACCATAATGAACTGCTCTCGTGCCTGTCCAAAGGGCTTGAGCCCTGGAAAGCATATCCAACATATCAAAAACCTTGAGATGGGATTGGCCAGGACTTGA 1461 0.5086 MTSSTSLSVLLLTTVLCCASGFEFQVGGSAGWVVPPANQTDIYHKWASHNRFQVGDSIRFKYKKDSVMEVDEEGYKNCNSSHPDMFSNNGNTVFKFDHAGSFYFISGASGHCQKGQKMIVRVLNLEEESLPNHHHDNSSSSAAAAFRHQVSPVVPIVFFVFAFVASHRIKTGSFLKSISILIFVTSSSRAFHEHRLSLLYSLLQTPMATSLVRRSLSRVSSSLASKLLCARAHASEAQAQQVEPTARDSAAFKTFQIYRWNPENPSKPQLQEYQINLRECGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIDGCNGLACLTKIPTSSETTITPLPHMFVIKDLIVDMTNFYNQYKSIEPWLKRKNPPPVPGKEVPQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLDAINDEFKLYRCHTIMNCSRACPKGLSPGKHIQHIKNLEMGLART 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1102 486 CDD OsENODL1_like 22 123 IPR041846 -
Lele14g1102 486 FunFam Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial 243 352 - -
Lele14g1102 486 Pfam Plastocyanin-like domain 41 116 IPR003245 GO:0009055
Lele14g1102 486 Pfam 4Fe-4S dicluster domain 395 467 - -
Lele14g1102 486 FunFam Early nodulin-like protein 1 21 127 - -
Lele14g1102 486 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 266 343 IPR001041 GO:0051536
Lele14g1102 486 Gene3D - 243 352 IPR012675 -
Lele14g1102 486 SUPERFAMILY alpha-helical ferredoxin 353 479 - -
Lele14g1102 486 FunFam Succinate dehydrogenase iron-sulfur subunit SdhB 353 484 - -
Lele14g1102 486 Pfam 2Fe-2S iron-sulfur cluster binding domain 254 357 IPR025192 GO:0009055|GO:0051536
Lele14g1102 486 SUPERFAMILY Cupredoxins 22 123 IPR008972 -
Lele14g1102 486 CDD fer2 284 318 IPR001041 GO:0051536
Lele14g1102 486 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 305 313 IPR006058 GO:0051537
Lele14g1102 486 PANTHER SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN 243 481 - -
Lele14g1102 486 ProSiteProfiles Phytocyanin domain profile. 22 124 IPR003245 GO:0009055
Lele14g1102 486 Gene3D - 353 484 IPR009051 GO:0051536
Lele14g1102 486 SUPERFAMILY 2Fe-2S ferredoxin-like 252 352 IPR036010 GO:0051536
Lele14g1102 486 Gene3D - 21 127 IPR008972 -
Lele14g1102 486 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 386 416 IPR017896 -
Lele14g1102 486 TIGRFAM dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 257 477 IPR004489 GO:0006099|GO:0016491
Lele14g1102 486 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 396 407 IPR017900 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1102 Lele-ChrLele14 20803710 20806413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1102 7 126 Phytocyanin Superfamily AT1G48940 53.719 1.07e-43 150