Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele14g1097 | ATGGCTCGCCTCGTCGCTGCTTGCTTTGTTCTTTTCTCTTTCTCTCTCATTGTTTCCTGCGTCGCAGTTCAAGACCCTGAGCTAGTTGTACAAGACGTACAGAGAATAATCAATACGTCTAGGAGAAATTTGGGGTATTTATCATGTGGAACCGGAAACCCCATTGACGACTGCTGGAGGTGCGACCCGAACTGGGAGAGGAACCGGCAGAGGCTGGCCGATTGCGCCATTGGGTTCGGCAAGGACGCCATCGGCGGAAGAAACGGTCGAGTTTATGTGGTGACAGACTCCGGCGACGACGACCCGGTGAACCCTAAGCCAGGAACTCTGAGACACGCCGTCATACAAGACGAGCCGTTGTGTAGGCACGGGTATTTTCATGTGGTGAACAATGATTATACACACTGGGAAATGTATGCGATTGGAGGGAGTGCGAATCCTACGATAAACAGTCAGGGAAATAGGTTTCTGGCACCGGATAATAGGTTTAGCAAGGAGGTGACGAAGCACGAGGATGCTGCAGAAGGAGAGTGGATGAACTGGAATTGGAGATCAGAAGGTGACTTGTTCTTGAACGGAGCTTATTTCCGGCAATCTGGAGCGGGAGCTTCTTCAAGCTACGCTAGGGCTTCAAGTCTCAGTGCGAGACCTTCTTCTCTCGTTGGCTCCATGACCATGACTGCTGGTGTACTCACGTGCAGGAAGGGAGCTCGTTGCTGA | 720 | 0.5167 | MARLVAACFVLFSFSLIVSCVAVQDPELVVQDVQRIINTSRRNLGYLSCGTGNPIDDCWRCDPNWERNRQRLADCAIGFGKDAIGGRNGRVYVVTDSGDDDPVNPKPGTLRHAVIQDEPLCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDAAEGEWMNWNWRSEGDLFLNGAYFRQSGAGASSSYARASSLSARPSSLVGSMTMTAGVLTCRKGARC | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele14g1097 | 239 | SMART | amb_all | 1 | 162 | IPR002022 | - | |
| Lele14g1097 | 239 | Gene3D | - | 120 | 232 | IPR012334 | - | |
| Lele14g1097 | 239 | Gene3D | - | 52 | 119 | IPR012334 | - | |
| Lele14g1097 | 239 | PANTHER | PECTATE LYASE 18-RELATED | 119 | 236 | IPR045032 | GO:0030570 | |
| Lele14g1097 | 239 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 20 | - | - | |
| Lele14g1097 | 239 | PRINTS | Pollen allergen Amb family signature | 99 | 124 | IPR018082 | - | |
| Lele14g1097 | 239 | PRINTS | Pollen allergen Amb family signature | 75 | 92 | IPR018082 | - | |
| Lele14g1097 | 239 | SUPERFAMILY | Pectin lyase-like | 119 | 239 | IPR011050 | - | |
| Lele14g1097 | 239 | SUPERFAMILY | Pectin lyase-like | 33 | 120 | IPR011050 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele14g1097 | Lele-ChrLele14 | 20780116 | 20781510 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele14g1097 | 114 | 239 | Polysaccharide Lyase | AT4G13710 | 71.429 | 1.10e-60 | 195 |