Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1050 ATGTCGAGAAATGTGTATGAGCGGTTTTTCAACCACACCCATTTGAAGAGGGCTTGGATTCCGCATCAAATCCAGGAAAAAGATGGGCATTTGAACTACACACCACCAGTTCTGCCTTCATATCCATCCCCATTCCCAGGTTCTACAAGCAACGAATCAACGTCGTCTTCGTCTTCACCTCCGTCCGCCGCCACTACGAGGAATAGTCCGGCTGTTCTTTTCATTATAGTGATTCTCGCCGTGCTGTTTTTCGTATCCGGTCTGCTTCATCTTCTTGTCAGATTTCTCGGGAAGCACCCATCTGCTCAATCTAATGGACACCAGGACGTTTCTGGCTCCGATGCTCTGCAGAGGCAGCTTCAACAACTTTTCCATCTCCATGACTCAGGGCTGGATCAAGCTTTCATTGACGCGCTTCCTGTTTTCCAGTATAGAGAAATTGTGGGTCTGAAAGAACCATTTGACTGTGCTGTTTGTCTCTCTGAATTCTCTGAAAATGATCAGCTCAGGCTGCTTCCTACCTGCAGCCATGCTTTTCACATTGATTGCATAGACACCTGGCTCCTATCCAACTCGACATGTCCACTCTGTAGAGGAGCCTTGTACGCCCCTGGACTCTCTGTGGAAAGCCCCATGTTTTATTTTGATGATATGAGGGAAGAAGATGGGTGCCCTTGCAATGGAGAAGGTGGGGTAACTACCAGACAAAAAGCTGTGGAAATTGAAGAAATTATAGAGAAAGCAGTTCTCCCTGTAAGACTTGGTAGATTCAGAAGGCTTGATATGGATGCAGGGGATAATGCAGGAGGAGAGACAAGCAGCAGTAATCTAGATGCGAGAAGATGTTTCTCAATGGGGTCTTACCAGTATGTGCTTGGCAACTCGGACCTGCGAATTACCTTGGACGGGGATAGAAAGCTCTCGGAGTCGGAAGGAACAGAAGAGACAGATAAGCTTTCAATGGAGGGTGATAAGGAAGCCAAAAAGATTACTAGTGTGAATAAGGGTGAGAGCTATTCTGTCTCAAAAATCTGGTTGTGGTCGAACAAGGGAAAATTCTCTAGTTCTTCGAATGATCAGAGGGGCATGCCATCTTCTCTAAGCACAGATTTACCATGGATGAGAACAACAGAAGGGACATAA 1143 0.4628 MSRNVYERFFNHTHLKRAWIPHQIQEKDGHLNYTPPVLPSYPSPFPGSTSNESTSSSSSPPSAATTRNSPAVLFIIVILAVLFFVSGLLHLLVRFLGKHPSAQSNGHQDVSGSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYREIVGLKEPFDCAVCLSEFSENDQLRLLPTCSHAFHIDCIDTWLLSNSTCPLCRGALYAPGLSVESPMFYFDDMREEDGCPCNGEGGVTTRQKAVEIEEIIEKAVLPVRLGRFRRLDMDAGDNAGGETSSSNLDARRCFSMGSYQYVLGNSDLRITLDGDRKLSESEGTEETDKLSMEGDKEAKKITSVNKGESYSVSKIWLWSNKGKFSSSSNDQRGMPSSLSTDLPWMRTTEGT 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1050 380 CDD RING-H2_PA-TM-RING 155 198 - -
Lele14g1050 380 MobiDBLite consensus disorder prediction 42 63 - -
Lele14g1050 380 SMART ring_2 156 197 IPR001841 -
Lele14g1050 380 MobiDBLite consensus disorder prediction 306 332 - -
Lele14g1050 380 MobiDBLite consensus disorder prediction 44 63 - -
Lele14g1050 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 65 345 - -
Lele14g1050 380 FunFam RING-H2 finger protein ATL46 118 203 - -
Lele14g1050 380 Pfam Ring finger domain 155 198 IPR001841 -
Lele14g1050 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 203 IPR013083 -
Lele14g1050 380 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
Lele14g1050 380 SUPERFAMILY RING/U-box 135 203 - -
Lele14g1050 380 MobiDBLite consensus disorder prediction 352 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1050 Lele-ChrLele14 20503116 20504258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1050 87 357 C3H Transcription Factor Family AT2G18650 42.244 2.64e-56 188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1050 14 20503116 20504258 Lele15g1302 15 7538995 7540146 hybridization
Lele14g1050 14 20503116 20504258 Lele16g1336 16 7605253 7606407 hybridization