Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1032 ATGGATCTGATCCGCTTGCTCTCTCCGCGGCATATTTTCCTGAGAAAATCTACCAACTATATGAAGAGAACTAGGGACGATACTTATGCTTCTTCTCAATTAAAGCGACCCATGAGTTCTTCACGTGGGGATTCCTATGGCCTATCCCAAATCCCTGGAGGAGGGGGAGGAGTGGGAGGGGGAGCTACTTCACAGAAATTGACTACCAATGACGCTTTATCATATTTGAAGGAAGTGAAAGACATGTTTCATGACCAAAGAGAAAAATATGACGTGTTCTTAGAGGTCATGAAAGATTTCAAGGCTCAACGTACTGACACTGCTGGTGTCATAGCAAGAGTGAAAGAATTATTCAAAGGGCACAATAACTTGATTTTTGGATTTAACACCTTCTTGCCAAAAGGGTATGAGATTACACTTGATGAGGATGAGGCTCCTCCAAAGAAAACTGTTGAATTTGAAGAAGCTATAAGCTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGATCATGTTTACAAATCATTCTTGGACATTTTGAACATGTACCGCAAAGAGCACAAGGATATTGGTGAGGTGTACAGTGAGGTTGCTTCCCTTTTTGAGGACCACGTGGATTTACTTGAGGAGTTTACTAGATTCTTACCAGATACCTCTGCAGTGCCTTCAACACAGCATGCTCCTTATGGTCGAAACACATTTCCACGTTTTAGTGAGCGAGGTTTTACAGCACCCATGATACGACCAATGCAAGTGGACAAGCACCGCTATCGGCGGGAAAGGCTTAATTCTCATGATCGTGATCCAAGTGTTGATCGTCCTGAACTGGATGATGACAAGGCACTAATGAAATCTCACAAGGAGCAGAGGAAGCGTGTTGATAAGGAAAGTAGGGATAGGAAATTTCGTGACCAGGATGAGAGAGAACCTGATCATGATAATAACAGGGATTTAAAATCACAATTTTCTGACAAAAAGACATCTGTCAAGAAGGCTGAAGGTTTTGGGTTGGCAGCTGATTTTGCTTCTTATGATGACAAAGATACCTTAAAGAGCATGTATAACCAAGCATTCAGTTTTTGTGAGAAAGTTAAGGAAAAGTTGGGCAGTTCAGATGACTACCAAGCATTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATAAAAAGGAATGATTTGCAGAATTTGGTGACTGACTTACTTGGAAAGTACCCTGATCTGATGGATGAATTCAACGAGTTCTTGGAGCGTTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATAAGTAAAAAGTCATTATGTGGTGATGGTCAATTATCCAGAACATTAAAGTTGGAGGACAAAGACAAAGACCATAAGCGTGAGATGAATGGAGCTAAAGACAAGGAAAGACACCGGGAGAAATACTGGGGAAAATCCATTCAAGAACTGGACTTAAGTAACTGTCAACTTTGTGCTCCAAGCTATCGTCTTCTGCCAGAAGATTATCCAATTCCTGTGGCCAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAGTATGAAGAAAGCTTGTTTAGATGTGAGGATGACAGATTTGAGCTGGACATGTTATTAGAATCTGTAAGCTCAGCTGGCAAATGTGCAGAGGAGTTGTATAATAGCATTAATGAAAATAAGATCAATATGGAGGCTCCAATCTGTATTGAAGATCACTTTAGTGCTCTAAATTTAAGGTGCATTGAACGCCTGTATGGAGATCATGGACTTGATGTTCTGGACATATTACGAAAAAATCCAACTCATGCACTTCCTGTGATATTGACTCGTCTGAAGCAGAAACAGGAGGAGTGGAGTAGGTGTCGTTCTGATTTCAATAAGGTTTGGGCTGAAATTTATGCTAAAAACCACTACAAATCACTTGATCACCGGAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACTAAGTCTTTGGTGGCTGAAATCAAAGAAAAGAAGGCAAAGCAGCAGAAAGAGTATGATATTCTTCAGGCTATGGCTTCTGGAAATAAACAGCCTCCAATCCCACATATAGAGTTTGAATATTCGGATGTTGGGATTCATGAGGACCTATATAAACTTATTCGTTATTCATGTGAGGAGGTCTTCTCAAGTAAAGATATGTCAAGTAAAATTATGAGACTTTGGACTACCTTTTTGGAGCTTATACTTGGTGTTCCCTCTCGTACTCAAGGGACGGAAAATGTGGAGGACAGGAAAACTGGGCAACGTGTTGCCCATTTTGTTGCATCAAATGCAGGTGGTGATGGAAACTCCCGCGGAGACTCTATTCAAATGAATTCAAGGTTGCCAAAATCTGATAATGAAGTGGATGGTAGAGTAAACGAGGCAAAGAATGGTCCACAGGCTAGTTTAGCAGCCATTGACAAAGAAAATGGACCTGTTGACTGTCACCTAGCTTGTAGAGATGATTCTCTAATGGATAAAGGGAAGAACTATGCGGATTGTAGTGAAAAAATCTCTGGGTTTAGTAAGCAGATTGCTTCTGAAGAGCAATCAACCATCAATAATAATTCAATTGCAGTTAGAGGAGAAACTAGCATGACCAAGACCAGCTTAGAAATTACTTCAGGTTGTGTGCTTAATCCAGCTAGACCAACTACTACATTAGGCGGTGATGATGGTGTTGCCATTTCTCAGGGTGGTAATGGACCTTTTGTGGAGGGACGGGATATTGCTCCTCCACTTCCACTAGCCAATGGAGTGCTAATTGAAAGCACTAAAGTCAAAAGCCACGAAGAACCTGCTGGTCCTTACAAAGCTGAAAAGGAGGAGGGTGAATTATCACCCAATGTTGACTCAGAGGAGGATAATTTTGTTGGGTATGGAGACTCCTGTGGGCAGGCACTGCCTAAGTCAAAGCATGATATTGAAAGAGGAAATTATAAATCTAGAAATGGGGAGGAAGAATGCTGTCCTGAGGCTGGAGGTGATAATGGTGCAGATGCTGATGATGAGGACAGTGACAATGTTTCTGAAGCTGGTGACGATGCCTCAGTTAGTGAGTCTGCTGGTGATGCATGCTCTCGAGAAGAGCAAGAGGAGGATGAAGATATAGAACGTGATGATGTTGAGGGTAAGGCTGAGAGTGAAGACGAAGCTGAGGGCATATGTGATACACAATCCGCTGGAGGAGAGGGCTCATCATTACCATTATCAGAAAGGTTCCTTTTGTCTGTAAAGCCTCTCACAAAGCGTGTTTCCACAGTTTCACTCGTTGGGGAAAGAAATAATTCCAGGGTCTTCTATGGAAATGATGATTTTTTTGTTCTTTTTAGGCTTCATCAAATACTTTATGAAAGGATCTCATTAGCAAAAAAGTATTCAACGAGTGCTGAAACAAAATGGAAAGCAACAAAGGAGGCTTCTTCCCCAGATCCTTATTCAAGATTTATGAATGCACTTTACAACTTGCTTGATGGCTCTGCTGACAATGGAAAGTTTGAAGATGAGTGCCGAGGAATAATTGGAAACCAGTCATATATATTATTCACATTGGACAAGTTGATATATAAATTAGTCAGACAGCTTCAAACAGTTGTAACGGATGAGATAGACAATAAGCTTCTCCAATTGTATGAGTATGAAAAGTCGCGGAGACCTGGGAAATTAATCGATTCAGTCTATTATGCAAATGCACGTGTCATCCTTCATGATGAGAATATATATCGTTTTGAATGTTCATGTACTCCCTGGCAAGTGTTCATTCAGCTGATGGACAATATGAATGAAAAGCCTGAGGTGTTTGCTGTTTCAATTGATCCAAATTTTTCCTTTTATCTGTATAATGATTTTCTGTCTGTCTCTCCTGGGAAAAAAGAACCCCACGGCATCATACTGCAAAGAAACAAGCGCGGATATGGAGATCTGGATGAACTTTCATCTATTTGCTTAGCCACGGAAGGTGTTAAAATAATAAATGGATTGGAATGTAAGATAGCTTGCAACTCGTCCAAGATCTCCTATGTTCTGGACACGGAGGATTTTTTCTTCCGCCCCAAAAGGCAAAGGAGAACATCATCAGGACCACATCTTCCCGGCATTATTGAGCTAGACAGGAAAGATTTCTCAGATTCTTATCAGTTTCATAATTTTCTGCCCTCAGTGTGA 4233 0.4087 MDLIRLLSPRHIFLRKSTNYMKRTRDDTYASSQLKRPMSSSRGDSYGLSQIPGGGGGVGGGATSQKLTTNDALSYLKEVKDMFHDQREKYDVFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQNDDHVYKSFLDILNMYRKEHKDIGEVYSEVASLFEDHVDLLEEFTRFLPDTSAVPSTQHAPYGRNTFPRFSERGFTAPMIRPMQVDKHRYRRERLNSHDRDPSVDRPELDDDKALMKSHKEQRKRVDKESRDRKFRDQDEREPDHDNNRDLKSQFSDKKTSVKKAEGFGLAADFASYDDKDTLKSMYNQAFSFCEKVKEKLGSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKYPDLMDEFNEFLERCENIDGFLAGVISKKSLCGDGQLSRTLKLEDKDKDHKREMNGAKDKERHREKYWGKSIQELDLSNCQLCAPSYRLLPEDYPIPVASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAGKCAEELYNSINENKINMEAPICIEDHFSALNLRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEKKAKQQKEYDILQAMASGNKQPPIPHIEFEYSDVGIHEDLYKLIRYSCEEVFSSKDMSSKIMRLWTTFLELILGVPSRTQGTENVEDRKTGQRVAHFVASNAGGDGNSRGDSIQMNSRLPKSDNEVDGRVNEAKNGPQASLAAIDKENGPVDCHLACRDDSLMDKGKNYADCSEKISGFSKQIASEEQSTINNNSIAVRGETSMTKTSLEITSGCVLNPARPTTTLGGDDGVAISQGGNGPFVEGRDIAPPLPLANGVLIESTKVKSHEEPAGPYKAEKEEGELSPNVDSEEDNFVGYGDSCGQALPKSKHDIERGNYKSRNGEEECCPEAGGDNGADADDEDSDNVSEAGDDASVSESAGDACSREEQEEDEDIERDDVEGKAESEDEAEGICDTQSAGGEGSSLPLSERFLLSVKPLTKRVSTVSLVGERNNSRVFYGNDDFFVLFRLHQILYERISLAKKYSTSAETKWKATKEASSPDPYSRFMNALYNLLDGSADNGKFEDECRGIIGNQSYILFTLDKLIYKLVRQLQTVVTDEIDNKLLQLYEYEKSRRPGKLIDSVYYANARVILHDENIYRFECSCTPWQVFIQLMDNMNEKPEVFAVSIDPNFSFYLYNDFLSVSPGKKEPHGIILQRNKRGYGDLDELSSICLATEGVKIINGLECKIACNSSKISYVLDTEDFFFRPKRQRRTSSGPHLPGIIELDRKDFSDSYQFHNFLPSV 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1032 1410 SUPERFAMILY PAH2 domain 146 218 IPR036600 GO:0006355
Lele14g1032 1410 Gene3D Paired amphipathic helix 148 220 IPR036600 GO:0006355
Lele14g1032 1410 ProSiteProfiles PAH domain profile. 65 135 IPR003822 GO:0006355
Lele14g1032 1410 MobiDBLite consensus disorder prediction 948 969 - -
Lele14g1032 1410 SMART hdac_interact2seq4b 484 584 IPR013194 -
Lele14g1032 1410 MobiDBLite consensus disorder prediction 25 63 - -
Lele14g1032 1410 Pfam Sin3 family co-repressor 488 578 IPR013194 -
Lele14g1032 1410 MobiDBLite consensus disorder prediction 790 806 - -
Lele14g1032 1410 MobiDBLite consensus disorder prediction 784 811 - -
Lele14g1032 1410 ProSiteProfiles PAH domain profile. 351 420 IPR003822 GO:0006355
Lele14g1032 1410 Gene3D Paired amphipathic helix 349 422 IPR036600 GO:0006355
Lele14g1032 1410 ProSiteProfiles PAH domain profile. 149 219 IPR003822 GO:0006355
Lele14g1032 1410 SUPERFAMILY PAH2 domain 61 134 IPR036600 GO:0006355
Lele14g1032 1410 MobiDBLite consensus disorder prediction 25 47 - -
Lele14g1032 1410 FunFam Paired amphipathic helix protein Sin3 71 133 - -
Lele14g1032 1410 MobiDBLite consensus disorder prediction 992 1013 - -
Lele14g1032 1410 SUPERFAMILY PAH2 domain 354 420 IPR036600 GO:0006355
Lele14g1032 1410 Pfam Paired amphipathic helix repeat 88 132 IPR003822 GO:0006355
Lele14g1032 1410 Pfam Paired amphipathic helix repeat 172 216 IPR003822 GO:0006355
Lele14g1032 1410 Pfam Paired amphipathic helix repeat 373 417 IPR003822 GO:0006355
Lele14g1032 1410 MobiDBLite consensus disorder prediction 948 1090 - -
Lele14g1032 1410 MobiDBLite consensus disorder prediction 1020 1034 - -
Lele14g1032 1410 Coils Coil 680 700 - -
Lele14g1032 1410 Gene3D Paired amphipathic helix 71 133 IPR036600 GO:0006355
Lele14g1032 1410 FunFam Paired amphipathic helix SIN3-like protein 148 219 - -
Lele14g1032 1410 FunFam Paired amphipathic helix protein SIN3 348 422 - -
Lele14g1032 1410 MobiDBLite consensus disorder prediction 1050 1077 - -
Lele14g1032 1410 MobiDBLite consensus disorder prediction 223 326 - -
Lele14g1032 1410 MobiDBLite consensus disorder prediction 252 326 - -
Lele14g1032 1410 Pfam C-terminal domain of Sin3a protein 1123 1371 IPR031693 -
Lele14g1032 1410 PANTHER SIN3B-RELATED 64 1267 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1032 Lele-ChrLele14 20380306 20392615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1032 54 168 WRKY Transcription Factor Family AT4G12020 50.862 4.63e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele14g1032 Sin3a_C 3.5e-53 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1032 14 20380306 20392615 Lele15g1324 15 7657841 7668652 hybridization
Lele14g1032 14 20380306 20392615 Lele16g1356 16 7726811 7739114 hybridization