Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1011 ATGGGGGTTAGAATCACGTTACTGGTAGTGGCCTTGGCCATTACAATTCCATGCCTCGAGGCTAACATCGGAGAGTTTGACGATTATCTCCGAGAACAAGAAGCGCAGGCCCGGCGAGCAGCTCTCGAAGCCTACGTGCCCGACCCTTTAAGCGTCACGTCCGAGCTTAATATGCATGTTCACCTAGCGATGGATGAAGGCAACAGCAGCAGAGGGAGGGACCTGAGAGAGAAGGGAAAGAAAGGTTCCCCAAAACCATGCGTAGCCACCAACCCAATTGACCAATGCTGGAGATGCAACCCAGATTGGGAGAAGAATCGCTTTAGGTTAGCCGAATGCCCCATGGGTTTCGGCCGCAACGCCAAAGGAGGTTTGGGCGGTAAGATCTACGTCGTCACCGATAATTCCGACACCCACGTGATTAACCCGAAACCCGGAACTCTGAGGCACGCGGTGATCCAGAATGGGCCTTTGTGGATCATATTCAACCGCTCCATGGTCATCAAGTTGAAGCAGGAGTTGCTGGTCTCGTCCAACAAGACCATCGATGGTCGTGGACATCATGTCGCGATAAGAAACGGTGCCGGCATCACTTTGCAGTACGCTAGTAACGTCATCATCCACGACCTTCACATTGGATACATCAAACCTAAGAGGGGTGGTAGAATAAGGGACTCCGTCGACCACGTTTCGATTAGAACCAGAAGTGATGGCGACGCCATCAGCCTCTTTGGTGCCACCAATATTTGGATCGATCATATCTCCCTCGCCAATGCTGAGGACGGCCTCATCGACGTCATCATGGGTTCTACCGGCGTTACCATCTCCAATTGCCACATGACCAGACACAACGATGTGATGTTGTTCGGAGCTGGTGACATCTATCACGAGGACAAGATGATGCAGGTAACGGTGGCGTTCAACCACTTCGGGAACGGATTGATACAGAGGATGCCGAGATGCAGATATGGGTTCTTCCACGTGGTGAACAATGATTATACTCACTGGATTATGTACGCCATTGGAGGAAGCTCCAGCCCGACCATACTGAGCCAAGGGAACCGATTCTTTGCTCCGAACAACAACGCGACGAAGGAGATAACGAACAGGGTGGGAACTCGGCCGGAGAAGTGGAAAGACTGGCAATGGCAATCGGAGATGGACCAGTTGGATAACGGAGCCGTTTTCATTCAATCGGGAGGACCCATAACCTCCATCGACAGAAGCACTTTGATCCCACCAAGGCCTGGGAATGAAGCTCCATTGCTCGCAAGATATTCGGGTGCGATGAGGTGCAAGGCTGGCAAGCCTTGTTAA 1317 0.5201 MGVRITLLVVALAITIPCLEANIGEFDDYLREQEAQARRAALEAYVPDPLSVTSELNMHVHLAMDEGNSSRGRDLREKGKKGSPKPCVATNPIDQCWRCNPDWEKNRFRLAECPMGFGRNAKGGLGGKIYVVTDNSDTHVINPKPGTLRHAVIQNGPLWIIFNRSMVIKLKQELLVSSNKTIDGRGHHVAIRNGAGITLQYASNVIIHDLHIGYIKPKRGGRIRDSVDHVSIRTRSDGDAISLFGATNIWIDHISLANAEDGLIDVIMGSTGVTISNCHMTRHNDVMLFGAGDIYHEDKMMQVTVAFNHFGNGLIQRMPRCRYGFFHVVNNDYTHWIMYAIGGSSSPTILSQGNRFFAPNNNATKEITNRVGTRPEKWKDWQWQSEMDQLDNGAVFIQSGGPITSIDRSTLIPPRPGNEAPLLARYSGAMRCKAGKPC 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1011 438 Gene3D - 90 430 IPR012334 -
Lele14g1011 438 SMART amb_all 165 362 IPR002022 -
Lele14g1011 438 PANTHER PECTATE LYASE 18-RELATED 37 436 IPR045032 GO:0030570
Lele14g1011 438 MobiDBLite consensus disorder prediction 66 86 - -
Lele14g1011 438 Pfam Pectate lyase, N terminus 22 71 IPR007524 GO:0030570
Lele14g1011 438 Pfam Pectate lyase 171 356 IPR002022 -
Lele14g1011 438 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Lele14g1011 438 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Lele14g1011 438 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Lele14g1011 438 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Lele14g1011 438 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Lele14g1011 438 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Lele14g1011 438 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Lele14g1011 438 MobiDBLite consensus disorder prediction 66 83 - -
Lele14g1011 438 SUPERFAMILY Pectin lyase-like 91 404 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1011 Lele-ChrLele14 20281613 20283127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1011 2 438 Polysaccharide Lyase AT1G14420 53.333 1.54e-168 479