Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1001 ATGGCCTTCCCTCCTTCTCACACTTTCATGTTTCACACCAATCCACCCCATGAAGATCATCATCATCATCACGACCCCCACCTCTCCTCATCTCCATCCCTCAAATCCTTCCCTCCATTACCACCCCATCACTTTCAAACTCGGAGTGCACCGTTCATGGTGAAGAGATCGATGTCGTTTCCAGGGGTAGAGAGCAGGTGCGATATGGAAGAGAATGGAGGTGACGATGATTTGTCGGATGATGGGTCGGTGCAGATAGGGGAGAAGAAGAAGAGGCTGAATATGGAGCAGGTTAAGGCACTCGAGAAGAGCTTTGAGTTTGGGAACAAGCTCGAGCCAGAGAGGAAACTGGAGCTGGCTAAGGCTTTGGGTCTGCAGCCACGTCAGATCGCCATTTGGTTTCAGAACAGGAGAGCCCGTTGGAAGACCAAGAACCTCGAGAAAGAATACGAATCCCTCAAGAAACAGTTCGAAGCTCTCAAGGCCGACAACGATTCTCTTAACCTTCAGAACCAGAAACTTCATGCAGAGTTACAAGCTCTGAAAGGACGGGATCATTGTGAAGGAGGAACAGTGAGCCTGGTGAAGAAAGAAACTGAGGGCTCATGGAGCAATAATGGAAGTGACAAAAGCTCAAACATCAACTTGGACCTTTCAAGAACACCAGTTAGAAACAGTCCTGATTGTTCTCAGAACGGTAAAAGCCATCAGCAGCTCTTAGGCTCCAATCTAAAGCCCACCAGCCTAACACAACTTATCCAGTTCTCAACAAGATCAGACCTCCAAGACGAAACCTTCTCCAACATGTTCAACACCACCAACACTACCATCGATGATCATCAGCAGCAGAACTTCTGGATCTGGCCTCACGAGCAGCACCATTTTCATTGA 891 0.4826 MAFPPSHTFMFHTNPPHEDHHHHHDPHLSSSPSLKSFPPLPPHHFQTRSAPFMVKRSMSFPGVESRCDMEENGGDDDLSDDGSVQIGEKKKRLNMEQVKALEKSFEFGNKLEPERKLELAKALGLQPRQIAIWFQNRRARWKTKNLEKEYESLKKQFEALKADNDSLNLQNQKLHAELQALKGRDHCEGGTVSLVKKETEGSWSNNGSDKSSNINLDLSRTPVRNSPDCSQNGKSHQQLLGSNLKPTSLTQLIQFSTRSDLQDETFSNMFNTTNTTIDDHQQQNFWIWPHEQHHFH 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1001 296 Pfam Homeodomain 89 142 IPR001356 GO:0003677
Lele14g1001 296 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Lele14g1001 296 MobiDBLite consensus disorder prediction 1 50 - -
Lele14g1001 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 64 269 IPR045224 GO:0003700
Lele14g1001 296 Coils Coil 136 184 - -
Lele14g1001 296 FunFam Homeobox-leucine zipper protein ATHB-13 80 148 - -
Lele14g1001 296 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Lele14g1001 296 SUPERFAMILY Homeodomain-like 80 146 IPR009057 -
Lele14g1001 296 MobiDBLite consensus disorder prediction 198 243 - -
Lele14g1001 296 MobiDBLite consensus disorder prediction 13 29 - -
Lele14g1001 296 Pfam Homeobox associated leucine zipper 144 183 IPR003106 GO:0006355|GO:0043565
Lele14g1001 296 PRINTS Lambda-repressor HTH signature 124 140 IPR000047 GO:0003677
Lele14g1001 296 PRINTS Lambda-repressor HTH signature 115 124 IPR000047 GO:0003677
Lele14g1001 296 Gene3D - 83 153 - -
Lele14g1001 296 CDD homeodomain 89 145 IPR001356 GO:0003677
Lele14g1001 296 SMART HOX_1 87 148 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1001 Lele-ChrLele14 20222070 20223782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g1001 1 289 Homeobox Transcription Factor Family AT5G15150 47.588 5.78e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele14g1001 Homeodomain 1.4e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1001 14 20222070 20223782 Lele15g1359 15 7882590 7884357 hybridization
Lele14g1001 14 20222070 20223782 Lele16g1391 16 7912446 7914229 hybridization