Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0960 ATGGCAAGGAGGAGGAAGGCTGTGGAAGTAGAAGAAGACAGAAGCATGAAATGGGATGAGATGGTGAAGGAAGCTGACGCACTGGGCGTGAGCAGAAGAGCGAGGAAGCGGTTTGTTGGGGTGAGACAAAGGCCTTCTGGAAGATGGGTTGCCGAGATTAAGGATACTATTCAGAAGATTAGGGTTTGGTTGGGAACTTTTGATACTGCAGAGGAAGCTGCTCGAGCTTATGATGAGGCTGCTTGTCTCCTTCGTGGTGCCAACACTAGGACCAATTTCTGGCCATGTTCTTATTCTTCCTCAACCCCTGTTCTTTCCTCTAAGATCACCAATCTCCTCCTTCAAAGGCTCAAAACGAGGAACAACTCTTGCTCTGATTCTTCTTCCTCTGTTTCTCCTCTCTCTGATCAGCAAGCAGATTTGTACAATGAAGAAGAAGCTACGGATTTTTCTATTGACCAGATGACTGATTTCCTTAACGATCCTGAAGATTACAACAGCGCAGGGAACAATGACTTTAATATGTTCACTGATCATAGTGCGCAAATTGATTCCTTTACCAGTAGTCTTGAATCATGTTTGACTGAAACAGATGGGTGCAGGGAAAGAGAAATGGGGTCAGAGAATGACGTCAGAAATATTTCTGACTGCAATTCAAGAGGGGAAAGAGAGGAAGAAAGTGAAGAAGAAATGAAGCATATGGGTGTGGAGGATTTTGAGTTTCTGGACAAGGTTACTCCATCATGTTACTATTCACCCTTTGAGATGGCTAAAGAGATGGAGGAGCCTGTGGCGGAGGCAGAGAGCTATGGTGATGAGCGTGCAATGCTCAGAGCCGCCATGAAGAGGATGAAGTATGAGAGGAAGTTCTCAGCTTCCCTTTATGCATTCAATGGAATACATGAATGCTTGAAGCTGAAGTTAGAATCAGGAAACTCCAAGGCAAGAGGGGTTTCTGATCATTTAGCCAACCTTCAGATGGCATGTGGCAGCGAGGAGGACAAAGAAGACATGGGAGTAATGGGAAGGAAAGAAGAAGAAAACCCAGCGACATTAAACCAGGCGGAGGCTTCTTCATCTTCTACCAGTGTTGATGGTGAATTGTTGCTTTGGAATTCACTGGATCTTCCTCCCATATGTTTCGTTAACTAA 1152 0.4497 MARRRKAVEVEEDRSMKWDEMVKEADALGVSRRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSYSSSTPVLSSKITNLLLQRLKTRNNSCSDSSSSVSPLSDQQADLYNEEEATDFSIDQMTDFLNDPEDYNSAGNNDFNMFTDHSAQIDSFTSSLESCLTETDGCREREMGSENDVRNISDCNSRGEREEESEEEMKHMGVEDFEFLDKVTPSCYYSPFEMAKEMEEPVAEAESYGDERAMLRAAMKRMKYERKFSASLYAFNGIHECLKLKLESGNSKARGVSDHLANLQMACGSEEDKEDMGVMGRKEEENPATLNQAEASSSSTSVDGELLLWNSLDLPPICFVN 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0960 383 FunFam ethylene-responsive transcription factor RAP2-11 36 95 - -
Lele14g0960 383 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Lele14g0960 383 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Lele14g0960 383 MobiDBLite consensus disorder prediction 331 360 - -
Lele14g0960 383 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Lele14g0960 383 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Lele14g0960 383 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 303 - -
Lele14g0960 383 MobiDBLite consensus disorder prediction 201 228 - -
Lele14g0960 383 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Lele14g0960 383 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Lele14g0960 383 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Lele14g0960 383 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0960 Lele-ChrLele14 19954142 19955293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0960 31 113 AP2-EREBP Transcription Factor Family AT5G19790 71.084 3.52e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele14g0960 AP2 1.1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0960 14 19954142 19955293 Lele15g1406 15 8169079 8170071 hybridization
Lele14g0960 14 19954142 19955293 Lele16g1434 16 8174558 8175706 hybridization