Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0906 ATGGGAAGGAGGAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAGGTCACTTTTGCCAAGAGAAGAAATGGCCTTCTCAAGAAAGCCTATGAGCTCTCTGTTCTCTGTGATGCTGAGGTTGCACTCATCGTCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGCAATAGCATGCTGAAAACACTGGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTGGAAGTGAGCAAGCCCACCAAAGAGCTCGAGCAGGATAGCTACCATGAGTACTTGAAGCTGAAAGCCAGATTTGAATCTCTCCAAAGGACTCAGAGAAACCTTCTAGGGGAAGACTTGGGCCCACTGACTACCAAAGAACTGGAGCAGCTCGAGCGACAACTGGACTCATCTCTCAAGCAAGTGAGGTCCACAAAGACACAATTCATGCTGGACCAGCTATCTGATCTTCAAAATAAGGAGCAAGTGTTGGTTGAAGCAAACAGAGCTCTGACTATTAAGCTGGAAGAGATTAATGCAAGAAACCACTTCAGACAGTCATGGGAAGCTGATGAACAAAGCATGCCATATGAGACACACAATGCTCACTCTCAGGGCTTCTTTCAGCCTCTGGAATGTCATCCCACCTTGCAGATGGGACCCGAATACAGGTACGCTCCAGTAGCTTCAGATCAGATGGCTGCAACAAGTCAAGGCCAGCAAGTGAATGGCTTCATTCCAGGGTGGATGCTCTGA 747 0.4766 MGRRRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSSNSMLKTLERYQKCSYGAVEVSKPTKELEQDSYHEYLKLKARFESLQRTQRNLLGEDLGPLTTKELEQLERQLDSSLKQVRSTKTQFMLDQLSDLQNKEQVLVEANRALTIKLEEINARNHFRQSWEADEQSMPYETHNAHSQGFFQPLECHPTLQMGPEYRYAPVASDQMAATSQGQQVNGFIPGWML 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0906 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 183 - -
Lele14g0906 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele14g0906 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele14g0906 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele14g0906 248 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lele14g0906 248 FunFam MADS-box transcription factor 1 13 88 - -
Lele14g0906 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele14g0906 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele14g0906 248 Coils Coil 125 145 - -
Lele14g0906 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele14g0906 248 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele14g0906 248 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele14g0906 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele14g0906 248 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Lele14g0906 248 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0906 Lele-ChrLele14 19582253 19587795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0906 1 248 MADS-box Gene Family AT5G15800 71.483 3.52e-121 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele14g0906 K-box 2e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0906 14 19582253 19587795 Lele15g1460 15 8540765 8546665 hybridization
Lele14g0906 14 19582253 19587795 Lele16g1486 16 8531223 8535522 hybridization