Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0885 ATGCTGAAAGAAGGCAACGGCAATGGCGTCACCAGTAATAACAGCTGGGCACGTATCTGTGACACGTGCCGCTCTGCTCCCTGCGCTGTCTACTGCCGCGCCGACATGGCTTACCTCTGCATCGGTTGCGACTCCCGCATCCACGCCGCCAACCGCGTCGCCTCCCGCCACGAGCGCGTCTGGGTCTGCGAGGCCTGTGAACGCGCCCCCGCTGCGTTTCTCTGCAAAGCCGACGCCGCCTCCCTCTGCTCCTCCTGCGACGCCGACATCCACTCCGCCAACCCCCTCGCCAGCCGTCACCACCGCGTCCCCATTCTCCCCATCTACGGGCCTCCTTCCGCCGGGTCTGCTCCTGATGGGGATGGTGGCTTTCTAGCTCACGGAGGCGATGAGGCGGAGGAGGAGGAGGAGGTTGTGGATGAAGAGGACGAAGACGAGGCCGCCTCCTGGTTGTTGCTGAATCCTGTGAAGAACAACAACCACAACAACTCCAACAACAACAACAATCAGAGCAATGGGGTTTTGTTTGGTTCTGGGGAGGTTGATGATTATTTGGACCTCATGGATTGCAATTCATGTGCCGATAATCAGTTGACCGATCATTACAATCAGCAGCAACATTATGGTGTTCCTCAAAAGAACTGTGTTGGCGACAGTGTCGTCCCTGTTCAGCAACAGCAGCAGCCTTTTCAGTTGGGTTTGGACTTCGATTCGTCAAAAGCTGGCTACAGTGCTTTCAACGGTCCCGTTACTCAAAATGTTTTGATTTCGTCAATAGATGTTGGCATTGTACCGGAATCAACTATCAGCGATGGCTCGATTTCTCACTCAAGACCTCCAAAAGGGACAATTGACCTATTTTCTGGGCATCCAATTCAGATACCATCGCAGCTGAGTCCGATTGACAGGGAGGCTAGGGTGTTAAGATACAGGGAGAAGAAGAAGGCCAGAAAGTTTGAGAAGACAATAAGGTATGCGTCTCGGAAGGCATATGCAGAGACCAGACCTCGTATCAAAGGTCGATTTGCAAAGAGAACAGAGGTGGAAGCTGAAGTGGACCAGATGTTTTCTACTTCTCTAATGACGGAAACAGGATATGGCATTGTTCCTTCTTTCTGA 1119 0.5299 MLKEGNGNGVTSNNSWARICDTCRSAPCAVYCRADMAYLCIGCDSRIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPIYGPPSAGSAPDGDGGFLAHGGDEAEEEEEVVDEEDEDEAASWLLLNPVKNNNHNNSNNNNNQSNGVLFGSGEVDDYLDLMDCNSCADNQLTDHYNQQQHYGVPQKNCVGDSVVPVQQQQQPFQLGLDFDSSKAGYSAFNGPVTQNVLISSIDVGIVPESTISDGSISHSRPPKGTIDLFSGHPIQIPSQLSPIDREARVLRYREKKKARKFEKTIRYASRKAYAETRPRIKGRFAKRTEVEAEVDQMFSTSLMTETGYGIVPSF 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0885 372 Pfam B-box zinc finger 60 105 IPR000315 GO:0008270
Lele14g0885 372 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Lele14g0885 372 Pfam CCT motif 303 345 IPR010402 GO:0005515
Lele14g0885 372 CDD Bbox1_BBX-like 62 105 - -
Lele14g0885 372 CDD Bbox1_BBX-like 19 62 - -
Lele14g0885 372 MobiDBLite consensus disorder prediction 116 135 - -
Lele14g0885 372 ProSiteProfiles CCT domain profile. 303 345 IPR010402 GO:0005515
Lele14g0885 372 SMART bboxneu5 63 105 IPR000315 GO:0008270
Lele14g0885 372 SMART bboxneu5 15 62 IPR000315 GO:0008270
Lele14g0885 372 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Lele14g0885 372 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 20 360 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0885 Lele-ChrLele14 19434948 19436707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0885 1 372 C2C2-CO-like Transcription Factor Family AT3G02380 55.875 2.74e-134 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele14g0885 zf-B_box 4.1e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0885 14 19434948 19436707 Lele15g1481 15 8696626 8698330 hybridization
Lele14g0885 14 19434948 19436707 Lele16g1507 16 8667405 8669145 hybridization