Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0850 ATGGGATTGGTGATTACTGTATTTGTTTGTTCTCTGGAAACGAACAATGGTATTGGTGATTCTCAGCTCTCTCTGAACATTCTGTTTGGTTTGCAGTTCTATCAGTATCAGGTCGTTGGAAGGGCTCTCCCTCTCCCTACGGAATCACATGAACACCCGAAGATTTACCGCATGAAATTATGGGCCACTAACGAGGTTCGCACCAAGTCGAAGTTCTGGTATTTTTTGAGGAAACTGAAGAAGGTGAAAAAGAGCAACGGTCAAGTGCTTACTATCAATGTGATCTTCGAGAAGAACCCGACGACGATAAAGAACTATGGTATTTGGCTACGGTATCAGAGCAGGACTGGCTACTACAACATGTACAAGGAATACCGTGATACCACTCTAAATGGCGCGGTCGAGTCGATGTACCCTGAGATGGCTTCCCGCCACAGGGTCCGATTCCCCTGCATTCAAATTATTAAGACTGCCATGATCCCGGCAAAGCTTTGCAAAAGGGAGAGCAGCAAACAGTTCCACAACTCCAAAATCAAGTTCCCATTGGTTTACAAGAAAGTCAGGCCACCCACAAGAAAGCTGAAGACCACATTCAAGGCATCAAGGCCCAATTTAATGCATATTTCTTTGAGGCCAGTCTTCATTTTTATCCTTTCATGTTATGTTTCTTCTCTTCCTTTTACTGAGTGTTCATTCCTTAAGGAGGCGACTCAATCAGGCAGCTACAAGAGCTCAAATCACAAAATCAACAAGATCAATTCTCAGAAGGCATCTGATATAGCACTTCATGGATTGCTACTGTGGGCTTCAATGGGATTCTCGATGCCATTAGGGATACTTGCTATCAGAATGTCAAGTAGAGAGGGGAATGGATCAACGAGGAATAGGGTCCTCTTTTATCTCCATGTTGTATTTCAGATGCTCTCAGTGCTTCTTGCTACAGTTGGAGCAGTCATGTCCCTGAAGAACTTTGAGAATTCATTTGATAACAACCATCAAAGAATAGGTCTTGCACTTTATGGTGCTATATTGGTTCAATCTTTGATTGGATTTTTCAGGCCTCACAGGGAAAAGAAAGAGAGGACTTATTGGTACTTTATTCACTGGATATTAGGGACAGGAATCTCTTTTGTAGGGATCATCAACATTTACACAGGTCTCAAAACCTACCATAAGAGAACCTTAAAAAGCACAACTCTTTGGACTATCCTGTTCACAGCACAAGTCTCTTTCATTGCATTGATTTACCTCTTACAAGACAAAATGGAGTACATAAAAAAGCAAAGGGTGATTCCAGGCAGAGAGTCAACTGAACCTTCTGATCAAGACATACCTCATTTGCAGAACCAGAATGAGTTATTACCAGTAGTAGCATGTGGGAAGAAGAAAAATGCACTTAGCAATTTGTTTGACCAATAA 1419 0.4186 MGLVITVFVCSLETNNGIGDSQLSLNILFGLQFYQYQVVGRALPLPTESHEHPKIYRMKLWATNEVRTKSKFWYFLRKLKKVKKSNGQVLTINVIFEKNPTTIKNYGIWLRYQSRTGYYNMYKEYRDTTLNGAVESMYPEMASRHRVRFPCIQIIKTAMIPAKLCKRESSKQFHNSKIKFPLVYKKVRPPTRKLKTTFKASRPNLMHISLRPVFIFILSCYVSSLPFTECSFLKEATQSGSYKSSNHKINKINSQKASDIALHGLLLWASMGFSMPLGILAIRMSSREGNGSTRNRVLFYLHVVFQMLSVLLATVGAVMSLKNFENSFDNNHQRIGLALYGAILVQSLIGFFRPHREKKERTYWYFIHWILGTGISFVGIINIYTGLKTYHKRTLKSTTLWTILFTAQVSFIALIYLLQDKMEYIKKQRVIPGRESTEPSDQDIPHLQNQNELLPVVACGKKKNALSNLFDQ 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0850 472 Gene3D - 26 99 - -
Lele14g0850 472 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 35 157 IPR023573 GO:0003735|GO:0005840|GO:0006412
Lele14g0850 472 Gene3D - 100 172 - -
Lele14g0850 472 FunFam 60S ribosomal protein L18a 101 176 - -
Lele14g0850 472 Hamap 50S ribosomal protein L18Ae [rpl18a]. 33 98 IPR028877 -
Lele14g0850 472 Pfam Eukaryotic cytochrome b561 262 388 IPR006593 -
Lele14g0850 472 SUPERFAMILY RplX-like 100 175 - -
Lele14g0850 472 FunFam 60S ribosomal protein L18a 29 100 - -
Lele14g0850 472 PANTHER 60S RIBOSOMAL PROTEIN L18A 32 206 IPR028877 -
Lele14g0850 472 ProSiteProfiles Cytochrome b561 domain profile. 218 426 IPR006593 -
Lele14g0850 472 SMART 561_7 262 387 IPR006593 -
Lele14g0850 472 CDD Cyt_b561_FRRS1_like 233 420 - -
Lele14g0850 472 Gene3D - 213 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0850 Lele-ChrLele14 19156161 19160732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0850 23 205 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 81.967 3.67e-107 315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0850 14 19156161 19160732 Lele14g0850 14 19156161 19160732 ECH
Lele14g0850 14 19156161 19160732 Lele16g1540 16 8926621 8931193 hybridization