Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0844 ATGGGTCGTCGTAAGATCAAGATGGAGAGGGTGAAGGACCCAGCGTCGAGATTGGTGACGTTCTCAAAGCGCCGGAATGGACTCTTCAAGAAAGCGAACGAGCTAGCAATCCTGTGCGGCGCCGAACTCGCCATTGTTGTGTTCTCGCCAGGTGGCAAACCCTTCTCCTTCGGCCATCCGTCCGTCGACGCCGTGACTCAGAGGTTTCTCCTGCAACTCCAAGGCGAGGACAAGGACGAGGACGATGACGACGAGGAGGAGGAGGCAAAATCGCCTGCAGGCGGGACCTCTTCTTCTTCATCGAAGAAATCTTCTCGAAAAGCGGAGAAACTGAACAAGCGGCTGATGAATCTGACGAAGGAGCTGGAGGAAGAGAAGAAAAAGGGCGCGATGCTGGACAAGGCGATCGAGGAGAAGAAGATCAAGTATGGGCTCGGGCCTGAGAGTGGTCCTGATGATCTAAGCAAGCTCCAGGGATTGAAGCAATCGCTGGAGAAACTGAGGGAAGAGGTGAAGCTGCGGAAGAGAGAAACGGAGGCTGCGTCGTCGTTGCTGGTACTTGCAGAGAAATTACAGTTGAAGGAAGACAACAATGTTGGTGATGAAAGTGATGTTGGCGGTGAGACCAGAAATGGAAAGTAA 642 0.5312 MGRRKIKMERVKDPASRLVTFSKRRNGLFKKANELAILCGAELAIVVFSPGGKPFSFGHPSVDAVTQRFLLQLQGEDKDEDDDDEEEEAKSPAGGTSSSSSKKSSRKAEKLNKRLMNLTKELEEEKKKGAMLDKAIEEKKIKYGLGPESGPDDLSKLQGLKQSLEKLREEVKLRKRETEAASSLLVLAEKLQLKEDNNVGDESDVGGETRNGK 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0844 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele14g0844 213 Coils Coil 154 181 - -
Lele14g0844 213 Coils Coil 101 135 - -
Lele14g0844 213 SUPERFAMILY SRF-like 1 70 IPR036879 GO:0003677|GO:0046983
Lele14g0844 213 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Lele14g0844 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele14g0844 213 PANTHER MADS BOX PROTEIN 3 172 - -
Lele14g0844 213 MobiDBLite consensus disorder prediction 193 213 - -
Lele14g0844 213 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Lele14g0844 213 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele14g0844 213 MobiDBLite consensus disorder prediction 76 110 - -
Lele14g0844 213 MobiDBLite consensus disorder prediction 194 213 - -
Lele14g0844 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele14g0844 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele14g0844 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0844 Lele-ChrLele14 19131564 19132205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0844 1 190 Type I MADS-box Gene Family AT2G34440 40.415 1.91e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele14g0844 SRF-TF 1.5e-23 No_clan