Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0740 ATGGATTTCTCCAAGAAGCGCAAAACCGAGGAGAACGGAACCGACGATTCCGTGCCCTCAACAACCCCCCTTGGCGCGGATGACATCCGCAGGATCCTCCAACCCTTCACGCAAGAACAGCTTATCGACCTGCTTCAAGCAGCTGCTCTTCATCACCCTGACGTTCTCGAGTCTATACGTTCCGTCGCCGACCGTGATTCCGCCCTTCGGAAACTCTTTGTTCGGGGGCTTGCAGGGGAAACCACCACGGAGACACTCAGCAGTGTTTTCTCTTCTTTTGGACCGCTCGATGAGGCGATCGTTATCTTCGACAAAACGACCGGGAAGTCCAAAGGGTACGGCTTTGTGACGTTTAAGCACGTTGATGGTGCTATATTGGCTTTGAAAGAGCCCAGCAAGAAAATTGACGGGAGAATGACGGTGACCCAGCTTGCGGCTGCTGGATTATTGGCCAGTCAAGGGACTAATGCGGCTGCCGCAGCCACAAGTGATGTCTCTACCCGAAAAATTTTCGTGGGCAATGTGCCGTTTGATATCTCGTCGGAGAGGCTGTTGAGTTACTTTTTGGCATTTGGGGAAATCGAAGAAGGGCCTCTTGGGTTTGACAAAGGTAATGGAAAGTCCAAAGGTTTCGCATTCTTTGTGTACAAAACGGAGGAGGGTGCTAAGGCATCTCTAGTTGAGCCAGTCAAAACTATTGATGGGCATCAAGTGCTTTGTAAATTGGCCATGGATAACAAGAAGGGAAAATCAGGAGGAGCTCCTAACCAGGGCCCTCCTGGGTTACCTGGCAATGGCATGGCAGCACAACAACCGCAACCATCTTTACCTGGCCCCATGATGGGATCAAATTATGGTGGCCATGGCTCTTCTTATGGGGGATTTGGTGGTGCGCATCAGGGCCCCATGGCAGTGCCTGGTAATAATTATGGGTTGCAGTCTTCATTGCCGCCATATGGCACTCAGGTTCCATCTACCTTAACTCCTAATAGCGGTGGGGGATACGGTCCTGGAATTGGAGGGGCTTATAGTGGTTCTCAGTTCAGTGGGCCAACTTCCGGTGATTATGGCGCTAGGCTGCCTCCAACTTCTGCTGGAATGCCTTCCGGAGGATATCCAGATGGTTCACATTATAATTTGCCCGCATCTGCTGTTCCCTCGCAGCATCAACAGCCCATGCAAATGCCAAGGTTGGCTCCCGGCGGAATGTACCAAGGCATGCCTCCCTACTATTGA 1236 0.517 MDFSKKRKTEENGTDDSVPSTTPLGADDIRRILQPFTQEQLIDLLQAAALHHPDVLESIRSVADRDSALRKLFVRGLAGETTTETLSSVFSSFGPLDEAIVIFDKTTGKSKGYGFVTFKHVDGAILALKEPSKKIDGRMTVTQLAAAGLLASQGTNAAAAATSDVSTRKIFVGNVPFDISSERLLSYFLAFGEIEEGPLGFDKGNGKSKGFAFFVYKTEEGAKASLVEPVKTIDGHQVLCKLAMDNKKGKSGGAPNQGPPGLPGNGMAAQQPQPSLPGPMMGSNYGGHGSSYGGFGGAHQGPMAVPGNNYGLQSSLPPYGTQVPSTLTPNSGGGYGPGIGGAYSGSQFSGPTSGDYGARLPPTSAGMPSGGYPDGSHYNLPASAVPSQHQQPMQMPRLAPGGMYQGMPPYY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0740 411 MobiDBLite consensus disorder prediction 350 374 - -
Lele14g0740 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 138 IPR000504 GO:0003723
Lele14g0740 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 236 IPR000504 GO:0003723
Lele14g0740 411 MobiDBLite consensus disorder prediction 246 278 - -
Lele14g0740 411 Gene3D - 151 299 IPR012677 -
Lele14g0740 411 MobiDBLite consensus disorder prediction 1 25 - -
Lele14g0740 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 256 IPR000504 GO:0003723
Lele14g0740 411 Gene3D - 61 148 IPR012677 -
Lele14g0740 411 PANTHER GEO13361P1-RELATED 53 303 - -
Lele14g0740 411 CDD RRM_RBM24_RBM38_like 70 145 - -
Lele14g0740 411 SUPERFAMILY RNA-binding domain, RBD 161 265 IPR035979 GO:0003676
Lele14g0740 411 SUPERFAMILY RNA-binding domain, RBD 61 142 IPR035979 GO:0003676
Lele14g0740 411 SMART rrm1_1 169 241 IPR000504 GO:0003723
Lele14g0740 411 SMART rrm1_1 71 143 IPR000504 GO:0003723
Lele14g0740 411 CDD RRM_RBM24_RBM38_like 168 243 - -
Lele14g0740 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 147 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0740 Lele-ChrLele14 18469805 18471040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0740 160 376 C2H2 Transcription Factor Family AT2G19380 30.000 1.26e-16 80.1