Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0721 ATGCCACATCTAGTTCATACAGGGTTGTTACAGCGACAGCAGAACAAATCAAAGCGGTATTTGACGGCCATGGGCTTGGCCGCTTTGGTTTCTGAGTATCGTGCGGGGCTGGGAGTCAATCAATTTGTATTTGTAAAACAAAAGAAGAATGCGGTTTCAATTATTGGCCATGAGAAAAAAAACAACGTAGAAATAAGTAAAATGGGTTTTGCAGATGGAGAAGATGACTCACCGGGTATCGGCCTGAGGGTGATTATCACTGCAACTTTCACGTTATTCGTTGTCATCTTCTTCATAATCATCTTCCACTTCTATGTCAGACGCCTTCGACGAAATCGTCAGCTGAACCTGAGCAGACGCTTCGGCGATCTACCGACAGTTTATCAAGTCAGTGCTCAAGTTTTACCCATTGATGTGCAATCAAGTTCACTGAACAACGACCGTCAGGGGCTTGACTCTTTCGTCATGGCGTTGATTCCTAAGTTTTGGTACAAGCAAACGGACCAGTTCAAGGACGGCGAAATCATAGAGTGCTCGATTTGCTTAGCCATCATTGTGGAAGATGCAGCCGTTAGGGTTTTGCCTAACTGCAAGCACGTGTTTCATGTTGATTGTGTTGACACTTGGTTCGATTCTAACACCACTTGCCCGATCTGTCGCACGGTGGTTGAACCTACCGTGGCGTCTGGCGGTGGCGCTGTTCAACCCACGGCACCGCCGGAATTAGAGAATGGCAGGACGATCTAA 747 0.4685 MPHLVHTGLLQRQQNKSKRYLTAMGLAALVSEYRAGLGVNQFVFVKQKKNAVSIIGHEKKNNVEISKMGFADGEDDSPGIGLRVIITATFTLFVVIFFIIIFHFYVRRLRRNRQLNLSRRFGDLPTVYQVSAQVLPIDVQSSSLNNDRQGLDSFVMALIPKFWYKQTDQFKDGEIIECSICLAIIVEDAAVRVLPNCKHVFHVDCVDTWFDSNTTCPICRTVVEPTVASGGGAVQPTAPPELENGRTI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0721 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 78 227 - -
Lele14g0721 248 SMART ring_2 178 219 IPR001841 -
Lele14g0721 248 MobiDBLite consensus disorder prediction 229 248 - -
Lele14g0721 248 CDD mRING-H2-C3H2C2D_ZSWM2 177 220 - -
Lele14g0721 248 ProSiteProfiles Zinc finger RING-type profile. 178 220 IPR001841 -
Lele14g0721 248 Pfam Ring finger domain 177 220 IPR001841 -
Lele14g0721 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 226 IPR013083 -
Lele14g0721 248 SUPERFAMILY RING/U-box 161 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0721 Lele-ChrLele14 18375339 18378150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0721 80 225 C3H Transcription Factor Family AT2G42360 36.054 2.95e-26 100
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0721 14 18375339 18378150 Lele15g1649 15 9803530 9804075 hybridization
Lele14g0721 14 18375339 18378150 Lele16g1685 16 9766296 9768486 hybridization