Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0679 ATGTCACTCTCAAAATCTCCGTCTGCTGCCGATGAGGATAGCGACCCGTCGATTGAAATGGAAGTAGAGGAAGATCCTGAGGAGGAAGAAGAATATGAAGAAGTGGAAGTAGAATATGAAGAAGAGGAAGATCCCGAGCAAGTAGAATATGAAGAAGTGGAAGTAGAGGAAGAAGTGGAGGAAGAGGAAGAAGAGACGGGGGAGCAAGAGGGAAAAAAGGAGAACGGAGAGGAAGTGGAAGAAGAGGAGGAGGAGGAAGGGGAAGAAGAGGAGGAGGAGGAGGAAGGGGAAGAAGAGGAAGAGGAGGAGGAAGGGGAAGAAGAGGAGCAGTGGGAGCAAGATGAAGGAGAGGAGAAGGGAGAGGAAGAGGAAGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGGGAGAGGAGGACAAATTTCAGGTGTCAGAACCTCCAGAAGATGCCGCTAAGGACCACCTTGAAGAGTTGAGCCAACATATGGAGTCTGAGGGGCAAGAGAGCAACTTGAGGCTAGTTTCTTCTGTGGCAGTAAACCCTGATACAATGTCTGCAGAAAATAACGATTCATGTAAGGTTCTTACGATGGAAAAGGAAGATTTTCAGCTGGAACATGTGACTCAAAGTAGTCCAAATTCAAGAAATAATGTGGGTACTGCTGAAGATGATAAACATCAAGGGTTAGATGATGCTAAAGAAAGTAATGGATCCCCTCTAAAATCTAAAACCTTTGAAGCAAACAATGAACCAAGTTGTGACAGCAAAGTTTATTTATGTGGTGTTAAAGAGTCTGGGACTGTCAGATCATCCAGTGATGCTGAAAAAGATTTGGCTATTGACATCCAGCGGAGAGGCTGCTCTGTTGAGGATGCTTACGTTGGCACTCAGAATTCTATAAACAAAATAAAGCAATCGAACATGCATTCAGGGGATGAAATGAAGCAAATGACATCAAGATTTTCCAGATTTACTTCCCCTGATGTGAGGACTCAGAGTCTTTCTCCCAGTGTTGAGATGAAAGATGCAAACAAACGGCCAGCAATGATATGCAGCTTTTTTGCTAAAGGATGGTGTATCAAAGGCAGTTCGTGTAGGTTTCTTCATATAAAAGATCAATTAAATAATACTGGCCAGCAGGCTGAAGGAGACTTGGTTTCTACAAATTGGAAGCGAGAAAGGCAATTGGAGGAAGGTCTGAGAGGTAATGCTGAGACATCTGGAATGCCTGATGCAACAGTTCCTTTGGCGAGCTCTTCTCTGCATTCTTCTGAATTTTCTGTAAAAGAGACCATCCAGGATGAACAAAAAGCAAGCCCTAGTCAGCATCCACCTCAAGATAAACAGAAGTTTCCATTACATTCGAAAGAGGATTTATCTTCTAAGAGCCATGTCTTACCAATTGGTAGAGACAGTTCTGCATCAAGGGATGGCTTGATTCCTGAAAGTAGATCTATATTTAATGCGTCAAACAACTATTTCAGCAGGAACCTCTCTTCTTATCCATCCTGTGTGGAGGGATTGGCTCCCATTGAAAACCAACAGGTGTACAACAAATATGCTTCCCAAGTTTCGGCTCCATCAAGTTATTTGATGTCTTCGAATTTATCTATTGGTGCAAGTACTTTGTATGCTCAAAAGCTGTTGAAAAGTGGAAAAGAATATCATGTCCCTAGATCCACTTTCTTGGGTTCGGAATGGGAGGAGTTGCCTCTAACTAGTTCATCTGGAGTTCGGCCACATGCCACTGAATATAAAAGAAAAATATCTTCTCATGATTGGGAGCCATCTGTCCCTTTTCGACCATCATTTTTTATTACTACAGCCAGTACATCATCTTCTGGAGATATGTATGACCCGTTTCATCCTTGTATTGAGATAACCAATATAGGAGATGGATCTCTGAAAGCTTCCTTTTTTGTTCACGGGCCTCCCAACCAGGCTTCATCTGAGGTGCGGACATATGGTGATTGTGCTGTAGCTGGGGACAAGGTGGCAGATATTAATTACGACAGGAGTTCTGTATCATCTCATCACAGATTTAATGAGAATGAGGCAAACCAGAGTTATATTCCTTCAGAAAAAGATGGCTGTGCACATGAAATGGAGACAACAGTCACGGCCCATCTAAACTCCCATAACGGTAAAGCAAGCATAGGAGAAAATACCCTTGCTGTTGAAGATAATACAAAAACTGAAGTTGAACAAACAGAGGATGATGCAAGTTCTCGAGGTGAAGGATCATTACCAAAAAAGAGAAGAGTAGATAAGGCTAAGAAAAACAATGAAATTAATGTTGATTTTCAGATGGATGGCAATATGCGGAATGATTTAAAGGGTCTAAAAATTTTTCGGGCAGCTCTTGTAGATTTAGTGAAAGAATTGCTAAAGCCATCTTGGCAGGAGGGTCATCTCAGCAAGGATGCACATAATACGATAGTTAAGAAATCAGTTGACAAAGTTATTAGCACCCTACAGCCCCTCCAGATTCCAACCACCATTGATGCAGTTAACCACTATGTTTCTTCATCTCGGTTGAAAATTGTGAAGCTCGTTGATGGATATGTCAATAAATACAGCAAGTCTTGA 2586 0.4234 MSLSKSPSAADEDSDPSIEMEVEEDPEEEEEYEEVEVEYEEEEDPEQVEYEEVEVEEEVEEEEEETGEQEGKKENGEEVEEEEEEEGEEEEEEEEGEEEEEEEEGEEEEQWEQDEGEEKGEEEEEEEEVEEEEEGEEDKFQVSEPPEDAAKDHLEELSQHMESEGQESNLRLVSSVAVNPDTMSAENNDSCKVLTMEKEDFQLEHVTQSSPNSRNNVGTAEDDKHQGLDDAKESNGSPLKSKTFEANNEPSCDSKVYLCGVKESGTVRSSSDAEKDLAIDIQRRGCSVEDAYVGTQNSINKIKQSNMHSGDEMKQMTSRFSRFTSPDVRTQSLSPSVEMKDANKRPAMICSFFAKGWCIKGSSCRFLHIKDQLNNTGQQAEGDLVSTNWKRERQLEEGLRGNAETSGMPDATVPLASSSLHSSEFSVKETIQDEQKASPSQHPPQDKQKFPLHSKEDLSSKSHVLPIGRDSSASRDGLIPESRSIFNASNNYFSRNLSSYPSCVEGLAPIENQQVYNKYASQVSAPSSYLMSSNLSIGASTLYAQKLLKSGKEYHVPRSTFLGSEWEELPLTSSSGVRPHATEYKRKISSHDWEPSVPFRPSFFITTASTSSSGDMYDPFHPCIEITNIGDGSLKASFFVHGPPNQASSEVRTYGDCAVAGDKVADINYDRSSVSSHHRFNENEANQSYIPSEKDGCAHEMETTVTAHLNSHNGKASIGENTLAVEDNTKTEVEQTEDDASSRGEGSLPKKRRVDKAKKNNEINVDFQMDGNMRNDLKGLKIFRAALVDLVKELLKPSWQEGHLSKDAHNTIVKKSVDKVISTLQPLQIPTTIDAVNHYVSSSRLKIVKLVDGYVNKYSKS 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0679 861 MobiDBLite consensus disorder prediction 163 188 - -
Lele14g0679 861 SUPERFAMILY CCCH zinc finger 344 368 IPR036855 GO:0046872
Lele14g0679 861 MobiDBLite consensus disorder prediction 204 249 - -
Lele14g0679 861 MobiDBLite consensus disorder prediction 448 463 - -
Lele14g0679 861 MobiDBLite consensus disorder prediction 1 188 - -
Lele14g0679 861 ProSiteProfiles Zinc finger C3H1-type profile. 344 371 IPR000571 GO:0046872
Lele14g0679 861 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 50 860 - -
Lele14g0679 861 MobiDBLite consensus disorder prediction 730 757 - -
Lele14g0679 861 MobiDBLite consensus disorder prediction 411 447 - -
Lele14g0679 861 MobiDBLite consensus disorder prediction 14 68 - -
Lele14g0679 861 MobiDBLite consensus disorder prediction 142 162 - -
Lele14g0679 861 Coils Coil 112 139 - -
Lele14g0679 861 MobiDBLite consensus disorder prediction 75 141 - -
Lele14g0679 861 MobiDBLite consensus disorder prediction 399 476 - -
Lele14g0679 861 SMART c3hfinal6 344 370 IPR000571 GO:0046872
Lele14g0679 861 Coils Coil 52 109 - -
Lele14g0679 861 Gene3D - 339 450 - -
Lele14g0679 861 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 349 368 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0679 Lele-ChrLele14 18105371 18109743 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele14g0679 zf-CCCH 0.00014 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0679 14 18105371 18109743 Lele14g0679 14 18105371 18109743 ECH
Lele14g0679 14 18105371 18109743 Lele15g1691 15 10058298 10060779 hybridization
Lele14g0679 14 18105371 18109743 Lele16g1728 16 10047130 10051485 hybridization