Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0677 ATGCCAGCACAGAAGCGCTTGTTCGACGCGCCAGAAGAAGGCGCTTTGCACGGCGAGAGTAACCACCATGAGAAGCCAGAAGATGGATGGGAATCCGATCGAAGCCCTTCGGAGAGCACCGGCGACAAAGAAGAGTTTGTTGTTATAAAATTGTCAGATATACGCAAGGAAGTTCAGTGTCCTATCTGCCTAGGCGTCATTCGAAAAACAAGAACTGTAATGGAATGCCTGCACCGCTTTTGCAGAGAGTGTATAGACAAATCCATGCGCCTCGGCAACAATGAGTGCCCTGCTTGCCGCACTCATTGTGCTAGCCGACGCTCACTGAGAGATGACCCAAACTACGATGCTTTAATTGCTGCTCTCTATCCAGATATAGACAAGTATGAGCAGGAGGAATTGGCTCTGCATGAAGATGAAAAAGCTCGCAATAAGCAGATCCAAGAATCTATTGCTCAGATGCTTCAACGACAAGCAGAAGCCCTGGGTAAAAAACGCAATGCCAAAGCGATCACAAGGAGGTCACAAGGTAACTATCGAACTTCGCATGTGAGGGCAAGAAGAAACTGTAGAAGTGCGATTGAACTTCAGGGATCTGATGACACTGAGGACATGAATGATGATGATGGGGCCAAGGGTTTTTCTTCTGGTGATGAGCTGATAGAAATCAGGTCAAAAAGATTTAGAACAGGGGCAGGAGCACAATTTCCTCCGCATTCTGCAACCACTGTTGCAGATGGTGCCAGTGATGAAAATACTCCTGAAGTGAGTAGAGAATTCTTGAGTCCTTCTAGTACACTTGCCTGGGGAAAAAATGGTCACCGGAGCCATACCCGAGTCAATGGCAAGAATGCCAGAAATAGTCGCCTTGCCAAATTGATTGATAATCTCCGTAGCTTGGAAGAAAACAATGATGAGTTGGGTGTCTGCCTCATGCTTGTGCCTTTTGATGAGAAAAGAACACCAAGTTTGCAGCAGCCATACCTCTGCTGCAGACCTACATTGTCTGTCAGGCACCTGTGCCAGTATGTCGCCCTTCAAACAGCTGTTCAGGCTGATGAGGTTGAGATATTCTTGGTAAAAGAGCAGCAAGCACACATTATCAGAGCTGCAGTCTCAGTAGATACATGCAAAGATAATTTGCAAGTGTTGAGAGAGCAGGAAACTTTGGCCGAACTTAAACCTGATAATTTTAGCTGTGGCCATCTGCTTATGGCATATAAGAGGAGGCTGTTGAACTCAACTGCGGCTAGCTTGAGAATCATAATTCAGTTCTCAGGACATGCCCTTCTTCCTCAAGAACCCTCTGTCCTCCAAGATGAAGAAAGATCTGCTCGAAACGCCTTGAATCAGTATCCAAGATTCTCACTTGACGGTAGAGATGCTATGTACAGATCTAGGTTTGGAATCCAAGAAGGAAGAAACTCAGTTTGCTGTGAGAGAAGCTTGGGAAGAAGGTTTCTGCTAGAAGAAGAAGAAGAAGAGAAGTATGGGTTAAGGAGGAATAATAATAATAAAAGGATTAAAAAGACTCTGTCTTTGCCCACAACTCTAGCAGGAGAGAGTGTTGTGTGGTGTGAACCTGAGGTTGTGGCTAAGCTGATGGGTTTGGAAGCCATGCCAGTGCCTGTGAGTAGCTGCAGAAGATCCTTAGGGATTAGCAGGAAGGAGAATTTCATGAGAAGGCAGAATCTGAGAAGGAGATTTGAGAGACATGCCTTGGAGAGAAGACTCGCCGCCATGGAAATGCACGCTTATAATAATGGTGGTGCTACGACCAGGAGGAGCAAGAATGAATCCTGCTCCAGAAATGAGTATTGTATTATGAAACCAGTTTTCGCTAGAATCATTCACAGTTGA 1860 0.4565 MPAQKRLFDAPEEGALHGESNHHEKPEDGWESDRSPSESTGDKEEFVVIKLSDIRKEVQCPICLGVIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEQEELALHEDEKARNKQIQESIAQMLQRQAEALGKKRNAKAITRRSQGNYRTSHVRARRNCRSAIELQGSDDTEDMNDDDGAKGFSSGDELIEIRSKRFRTGAGAQFPPHSATTVADGASDENTPEVSREFLSPSSTLAWGKNGHRSHTRVNGKNARNSRLAKLIDNLRSLEENNDELGVCLMLVPFDEKRTPSLQQPYLCCRPTLSVRHLCQYVALQTAVQADEVEIFLVKEQQAHIIRAAVSVDTCKDNLQVLREQETLAELKPDNFSCGHLLMAYKRRLLNSTAASLRIIIQFSGHALLPQEPSVLQDEERSARNALNQYPRFSLDGRDAMYRSRFGIQEGRNSVCCERSLGRRFLLEEEEEEKYGLRRNNNNKRIKKTLSLPTTLAGESVVWCEPEVVAKLMGLEAMPVPVSSCRRSLGISRKENFMRRQNLRRRFERHALERRLAAMEMHAYNNGGATTRRSKNESCSRNEYCIMKPVFARIIHS 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0677 619 MobiDBLite consensus disorder prediction 162 216 - -
Lele14g0677 619 Pfam DUF761-associated sequence motif 525 541 IPR032795 -
Lele14g0677 619 Coils Coil 489 509 - -
Lele14g0677 619 Coils Coil 283 303 - -
Lele14g0677 619 SUPERFAMILY RING/U-box 47 131 - -
Lele14g0677 619 Pfam Zinc finger, C3HC4 type (RING finger) 59 99 - -
Lele14g0677 619 SMART ring_2 60 99 IPR001841 -
Lele14g0677 619 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 130 IPR013083 -
Lele14g0677 619 MobiDBLite consensus disorder prediction 10 42 - -
Lele14g0677 619 MobiDBLite consensus disorder prediction 1 42 - -
Lele14g0677 619 MobiDBLite consensus disorder prediction 245 272 - -
Lele14g0677 619 Coils Coil 137 157 - -
Lele14g0677 619 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
Lele14g0677 619 CDD RING-HC_RING1_like 60 100 - -
Lele14g0677 619 PANTHER OS11G0578200 PROTEIN 19 410 IPR044592 -
Lele14g0677 619 MobiDBLite consensus disorder prediction 229 284 - -
Lele14g0677 619 ProSiteProfiles Zinc finger RING-type profile. 60 100 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0677 Lele-ChrLele14 18082646 18088632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0677 58 215 C3H Transcription Factor Family AT2G30580 26.829 9.09e-07 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0786 13 19715073 19720179 Lele14g0677 14 18082646 18088632 CCT
Lele14g0676 14 18071951 18077006 Lele14g0677 14 18082646 18088632 CCT
Lele15g1697 15 10076638 10081742 Lele14g0677 14 18082646 18088632 CCT
Lele16g1732 16 10069299 10074984 Lele14g0677 14 18082646 18088632 CCT
Lele13g0800 13 19796195 19797675 Lele14g0677 14 18082646 18088632 CCT
Lele14g0690 14 18165235 18167845 Lele14g0677 14 18082646 18088632 CCT
Lele15g1679 15 9999250 10001395 Lele14g0677 14 18082646 18088632 CCT
Lele16g1715 16 9985100 9987261 Lele14g0677 14 18082646 18088632 CCT
Lele14g0677 14 18082646 18088632 Lele15g1696 15 10070064 10074132 hybridization
Lele14g0677 14 18082646 18088632 Lele16g1731 16 10060395 10064437 hybridization