Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0649 ATGGAATCGAAGCTATTTCGCAGAATCGCGATGCAAAGTACGACCGCGAGCAGATTCTACTACACGAGTAGGACTAGGAAGCCCAGTCTTTACACTAAAATCAGTCCACTTGGGAGCCCAAGCGCCAGCGTGGTACCTGTGCTCGAGGATTGGGTCTATAAGGGGAACAAGATCAGCGTTGGCGAGCTTCAGCGAATCGTTCGAGATCTTCGCAAGCGCCGGAGGTTCACTCAAGCCCTAGAGTTATCTGAGTGGATGAATAAGAATGGTGTATGCATATTTTCATCCTCTGAACATGCTGTGCATTTGGATCTGATTGGCAAAGTTCATGGATATCCTTCTGCTGAAAGCTACTTTAATAGCTTGAAGGAAGACGATAAAAATAATAAGACATATGGTGCTCTCTTGAATTGCTATACACGGCAGCACCAGATTGAGAAGGCCCTCTCCCATCTGCAGAAAATGAAGGAGTTTGGGTTTACTTCATCACTAAGTTACAATGATATTATGTGTCTATACACCAACATTGGTCATGTTGAGAAGGTCCCTGGTGTACTGATCGAGATGAAAAAGAACAAAGTTTTGCCTGACAACTTCTCCTACCGAATCTGTATCAATGCTTTTGGTGTGAGGTCTGATATTGATGGAATTGAGAGAACACTAAAAGAGATGGAAAACCAATCTCACATTGTCATGGACTGGAACACTTATGCCGTGGTGGCTGATTTGTATATAAAAGCAGGACTTACGAGTAAGGCAGTTGATGCCCTAAAGAAAGCAGAGGAGAGGCTAGATAAGAAGGATGGTCTTGGTTACAATTTTCTTATTTCTCTTTATGCTCGTCTTGGAGACAAGACCGAGGTCATCAGATTATGGGAACGGGAGAAGAGTGATTGCAAGAGGTGCATAAACAGAGATTTCACGACCATGTTAGAATCTCTTGTAAGGCTTGGTGAGCTGGATGAAGCTGAGAAAATATTGAAGGAGTGGGAGTCCTCTGGCAATTGTTATGATCCTCGCATCCCAGATGTTTTCATCAATGGATACTCAAAAAAAGGTTTGCACGAGAAAGCAGAAATAATGCTGAAAAGCTTACAAAAGAGGGGGAAGGCGACCATGTCAAACAGGTGGACTGAAGTGGCAGCTGGATACCTTCATAAGGGTGAGATGGAGAAAGCATATGATTGCTTTAAAGCAGCCCTAAGGGCGGAAAATAAAGAATGGAAGCCGAATCCCAGGGTGTTCTCGGGCATAGTTAGTTGGCTTGGTGATAACGGAAGTGTTGAAGAAGTAGAAGCTTTGGTGGGTTCATTGAGAAACTTTGTCCCGGTAAACAAGCGAATGTACCACGCCCTCATCAAGGCTTATGTAAGACATGGAAAAGAAGTAGATGGGCTTTTGGATCGAATGAAGAAAGATAAAATTGATGAAGATGAAAAAACGAAAGAAATTCTTGATATGAGGAAGCCTTAG 1473 0.4318 MESKLFRRIAMQSTTASRFYYTSRTRKPSLYTKISPLGSPSASVVPVLEDWVYKGNKISVGELQRIVRDLRKRRRFTQALELSEWMNKNGVCIFSSSEHAVHLDLIGKVHGYPSAESYFNSLKEDDKNNKTYGALLNCYTRQHQIEKALSHLQKMKEFGFTSSLSYNDIMCLYTNIGHVEKVPGVLIEMKKNKVLPDNFSYRICINAFGVRSDIDGIERTLKEMENQSHIVMDWNTYAVVADLYIKAGLTSKAVDALKKAEERLDKKDGLGYNFLISLYARLGDKTEVIRLWEREKSDCKRCINRDFTTMLESLVRLGELDEAEKILKEWESSGNCYDPRIPDVFINGYSKKGLHEKAEIMLKSLQKRGKATMSNRWTEVAAGYLHKGEMEKAYDCFKAALRAENKEWKPNPRVFSGIVSWLGDNGSVEEVEALVGSLRNFVPVNKRMYHALIKAYVRHGKEVDGLLDRMKKDKIDEDEKTKEILDMRKP 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0649 490 Gene3D Tetratricopeptide repeat domain 43 162 IPR011990 GO:0005515
Lele14g0649 490 Gene3D Tetratricopeptide repeat domain 229 376 IPR011990 GO:0005515
Lele14g0649 490 Gene3D Tetratricopeptide repeat domain 163 228 IPR011990 GO:0005515
Lele14g0649 490 Gene3D Tetratricopeptide repeat domain 377 486 IPR011990 GO:0005515
Lele14g0649 490 ProSiteProfiles TPR repeat profile. 374 407 IPR019734 GO:0005515
Lele14g0649 490 PANTHER OS12G0527900 PROTEIN 23 477 - -
Lele14g0649 490 TIGRFAM PPR: pentatricopeptide repeat domain 131 160 IPR002885 -
Lele14g0649 490 TIGRFAM PPR: pentatricopeptide repeat domain 307 337 IPR002885 -
Lele14g0649 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Lele14g0649 490 Pfam PPR repeat 131 160 IPR002885 -
Lele14g0649 490 Pfam PPR repeat 345 369 IPR002885 -
Lele14g0649 490 Pfam PPR repeat 307 334 IPR002885 -
Lele14g0649 490 Pfam PPR repeat 448 472 IPR002885 -
Lele14g0649 490 Pfam PPR repeat 272 294 IPR002885 -
Lele14g0649 490 Pfam PPR repeat family 164 208 IPR002885 -
Lele14g0649 490 SUPERFAMILY TPR-like 168 437 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0649 Lele-ChrLele14 17848808 17850967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0649 29 473 EF-hand Containing Proteins AT1G02150 34.430 2.34e-86 273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0649 14 17848808 17850967 Lele14g0649 14 17848808 17850967 ECH
Lele13g0762 13 19507514 19514046 Lele14g0649 14 17848808 17850967 ECH
Lele14g0649 14 17848808 17850967 Lele15g1721 15 10294014 10299108 hybridization
Lele14g0649 14 17848808 17850967 Lele16g1760 16 10303011 10305158 hybridization