Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0642 ATGTACATAGCTTCCATGCGAAAGTCTTTCAAGGACTCCTTGAAAGTGCTTGAAGCTGATATCCAGCATGCCAATACCCTGGCATCGGATTTTCCCAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTTCTGTTTTTAGTGCAATGGACGGACTGTAATCTTGCAGGAGCCCTTGGGCTTCTAAGAATACTAATTTACAAGGTTTACGTGGATGGCACAACCACCATGTCTACTCATGAAAGAAAAGCAAGTATTAGAGAATTCTATGCGGTCATATATCCATCTTTATTGCAACTTCAGAAAGGTGTCACTGATACGGAGGATAAAAAACAAAAGGCTGTATGCATGGAGCGGTATAGAAGGAGAGATGATGAGGAACATAGGCAATCTTCAGATGTTGACATTGAAAGAGATGAAGAATGTGGTATATGCATGGAGATGAATAGTAAGGTTGTGTTGCCCAACTGCAACCATGCAATGTGCTTGAAATGCTACCGTGAATGGAGAACAAGGTCACAGTCATGCCCCTTCTGCAGGGACAGCTTGAAGAGGGTGAACTCGTGCGATCTCTGGGTATTCACCGACAGTAGAGACGTAGTAGATATGGCGATGGTGACGAGGGAGAATCTTAGAAGGCTTTTCATGTATATAGAGAAGTTGCCTCTGATTGTTCCAGACTCCCTTTTTGACCCCTATGACTCTCACCTCAGATAA 744 0.4395 MYIASMRKSFKDSLKVLEADIQHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAVCMERYRRRDDEEHRQSSDVDIERDEECGICMEMNSKVVLPNCNHAMCLKCYREWRTRSQSCPFCRDSLKRVNSCDLWVFTDSRDVVDMAMVTRENLRRLFMYIEKLPLIVPDSLFDPYDSHLR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0642 247 FunFam RING/U-box superfamily protein 129 198 - -
Lele14g0642 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Lele14g0642 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 199 IPR013083 -
Lele14g0642 247 SUPERFAMILY RING/U-box 140 194 - -
Lele14g0642 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Lele14g0642 247 SMART ring_2 151 188 IPR001841 -
Lele14g0642 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Lele14g0642 247 PANTHER RING FINGER PROTEIN 41, 151 8 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0642 Lele-ChrLele14 17815686 17819302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0642 122 189 Glycosyltransferase AT5G37200 32.877 3.43e-06 45.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0637 14 17774222 17785923 Lele14g0642 14 17815686 17819302 CCT
Lele15g1734 15 10387597 10399732 Lele14g0642 14 17815686 17819302 CCT
Lele16g1772 16 10395349 10409105 Lele14g0642 14 17815686 17819302 CCT
Lele14g0642 14 17815686 17819302 Lele15g1728 15 10343530 10346905 hybridization
Lele14g0642 14 17815686 17819302 Lele16g1767 16 10341994 10344460 hybridization