Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0608 ATGGCGGACGAAGGGTTCTATTACTCGGAACTGGTTGACGGAGATGCTGATGCTGATGATAAGTTGTTTATTGACCTTGTCACCGTTATGAATGTCCTTGATGAGGATTGTGATCCTTCGGAGAGTAGTCTGGAGGGTTTTTCGTTAAAAAATGTCTCACCTGGCGAATCCAGCATCCATGATAATTTTCAGCTTCAAAGTGGAAATTCTGCGCTTTGCTGTGATCATGAAAATCATGAACCTTCTTCACAGACTTGCTCTTCCTCTCATGCTGTACCTGACGGTTTTCAGCAGTTGGATCCTCATGATGGAAGTAATGAAATTTGCTACACAGAAAGGGAAGGAACTTCAGGATGTGAGATGCCAGCTCAATCTTTGGAACCTAGTGTCCGTGAGCCACATTTCAACAATATATCGGTTTGTGGGGATAATTTGAGTTTGAATCCTTTCTGGAAGGACAAAAATGAGAGCCAACTCAAGCATGTGGGAGAGGATGTTAAATCTGAATATGCTTCATACAGCCCCATCATTGAGAATGGTGATGTAAGTTTTGCACAATATAGAGCTTTTGATGAAGACATGTATGAAGGTGCTTCTGGACTGGAAACGGACTCGTGTACATCTTTTGAAATATCATTTAAGGATGCTAATGGAGGTTCACATATTGCAACATCAACCAATTCTACTATTTGCCAAGGCTCCAAGGCTCTTAGTGATTCTTTTGACTACTTTTCATCCTTGCATGGTTATAAGGGTAAAGATGATAGATTTCTAGCTTCTGACTTGTCTCTTGCTTATTTGCCCAATGCTTTTGGCTCTCAATTTTGGCCAAATCGAGAAATACTTGATAATGTGAACGGTGAAAACTTGGAGTATGTGGATGATGCCTCACATGTGAGTAGTAACATGCATTCCAGTTCTACTGGTGGGATTCCTTTTCAAGATAATCAATTTATATCAGCAGATAGTGAATTTTCTTCATTTTTTCCTGGTAATGCTTCATACTTTCCCTGTGAATACCAAGTAGCTTGTATCAAAGGTGAAAGAGATGAATCGATTGCCCCTTACCAGAACTCTCTTTATGAAAATTACTCTGAGTTTAATGGAGGCCAAGAGATGAATCAATTAAATGCAGGCCTAGGGATAAATCAGTTAAATAGTTCTATTCCTTCCATGGGAAATCATAGTTTTAATTTGTTGGAGTGTGAGGATAAGGATGCTGATATATTATCCAACATAAATCATCATTATCAGGAGATGATTGATGGTACTAGCTGTAAATTTCCAAGAGACACTGCTAATTTGAATAGACAAGCCTTAGACAAATCTTTGCCCTACTCCAAGGCCCCAATTGGCACTCAGAAGCAGTTTGGTTATGTTAAGAATGAAGGGGATGGAAAAATGATTCAATGTAGGAATTTTGATTCTCACTTCTTGAAAGCTGGCACTGAATTGGTTCACAGAAGTTTTTCAGAGAAATCCCATGTTGAGGATGATGACTCTGATGTCTGTGTGATTGAAAGCATTAGTCATCCTGCACCGACAAGTCAATCAACAGACCATCAGAATTCCCATAAGATACCCCAGTACTCTTCAAATGGTGATTTACAACCTTACATGTCACGAAGCACAAGGCCAAAGGCCTGTGATGAGCAATATATATTACGAGTTGCCATGCAGGATTTATCTCAGCCAAAGTCAGAAGTTATACCTCCAGATGGGTTGATGGCTGTTCCTCTATTAAGACATCAGAGAATTGCTTTGTCATGGATGGTTCAAAAGGAAACATCAAGTTTATACTGCTCAGGGGGAATCCTTGCAGATGATCAGGGACTTGGAAAAACAGTGTCAACTATTGCTTTGATACTGAAGGAAAGACCTCCAACACTAATAGCTTCCACCAATACACAAAAGGGTGAATTAGAACCTTTGAATCTGGATGTCGATGATGATGTTCTTGCTGAGGGTGGAGTGAAGGAAGATAAGCCTAGTGTAAGTCTGATTGAAAACAAGGATTTGTCAATGCAAACAAAGGGAAGGCCATCTGCAGGAACACTTATTGTTTGTCCCACTAGTGTCCTACGGCAATGGGCTGAAGAGTTGCAAAATAAGGTAACCAGCAGAGCAAATCTCTCTGTGCTACTGTACCATGGAAGCAATCGAACAAAAGATCCGTATATGCTGGCCAAGTATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTACCTAAGCAGCCTCTGGTTGACAAAGATGATGAAGAGAAAGGAAATTCTGAAGTTACTGCTTGTCTACCGCCTAGTAAGAAAAGGAAATGGCCCCCTTCTAGTAGAAGCGGCAAGAAGGGATTAGACCGTGCTTTGCTTGAGGCTTCTGCTCGCCCTTTAGCGAAGGTGGCATGGTTTAGAGTTGTCTTGGATGAGGCCCAAAGTATAAAGAATTACAGAACTCAAGTTGCAAGGGCCTGCTGGGGTCTTCGAGCTAAGCGAAGATGGTGCTTGTCTGGGACTCCTATACAGAATGCTATTGATGATCTTTATAGTTATTTTAGGTTTCTCAGATATGACCCTTACGCTGTTTATAATACATTCTGTTCTTCTATTAAGATTCCAATAAACAAAAATCCGAACAAAGGGTATAAAAAGCTACAAGCTATCCTAAAGACAATAATGTTACGCCGGACAAAAGGCACACTTCTTGATGGGGAACCTATTATTACACTGCCACCTAAATATGTGAAGCTGAAAAAAGTGGATTTTTCAAGAGAGGAGCGTGATTTCTATTCCAGACTGGAGGCTGATTCTCGTGCACAATTTCAGGAATATGCCAAGGCTGGAACTGTCAAGGAAAATTATGTCAACATACTATTAATGCTTTTACGCCTTCGACAAGCTTGTGATCATCCTCTCCTTGTTAAGCGCTACAATTCTAACTCTCTATGGAGATCTTCAGTTGAGATGGCAAAGAAACTTCCTTGCGAAAAACGAACATCACTTCTGAAATGTTTGGAGGCTTCCTTGGCTCTTTGTGGCATCTGTAATGATCCTCCTGAAGATGCAGTTGTTTCAGCTTGTGGTCATGTTTTTTGTAACCAATGTATTTGTGAACATCTTATTGGTGATGACAATCAGTGCCCTACTACAAATTGCAAAGATCAATTGAGTATGTCTTCGGTGTTTTCCAGAGCCACATTGAGCTGTTCTCTTTCTGACCAGGCTAGTAATAGTTGGGTTGGTTGCTCTGGTTCTGAAGTGGAGGGTTATGAGCCTTGTTCTCAGAGTCAGCCATCCGATTCTTCAAAAATTAAGGCTGCTGTTGAGTGA 3330 0.4072 MADEGFYYSELVDGDADADDKLFIDLVTVMNVLDEDCDPSESSLEGFSLKNVSPGESSIHDNFQLQSGNSALCCDHENHEPSSQTCSSSHAVPDGFQQLDPHDGSNEICYTEREGTSGCEMPAQSLEPSVREPHFNNISVCGDNLSLNPFWKDKNESQLKHVGEDVKSEYASYSPIIENGDVSFAQYRAFDEDMYEGASGLETDSCTSFEISFKDANGGSHIATSTNSTICQGSKALSDSFDYFSSLHGYKGKDDRFLASDLSLAYLPNAFGSQFWPNREILDNVNGENLEYVDDASHVSSNMHSSSTGGIPFQDNQFISADSEFSSFFPGNASYFPCEYQVACIKGERDESIAPYQNSLYENYSEFNGGQEMNQLNAGLGINQLNSSIPSMGNHSFNLLECEDKDADILSNINHHYQEMIDGTSCKFPRDTANLNRQALDKSLPYSKAPIGTQKQFGYVKNEGDGKMIQCRNFDSHFLKAGTELVHRSFSEKSHVEDDDSDVCVIESISHPAPTSQSTDHQNSHKIPQYSSNGDLQPYMSRSTRPKACDEQYILRVAMQDLSQPKSEVIPPDGLMAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPTLIASTNTQKGELEPLNLDVDDDVLAEGGVKEDKPSVSLIENKDLSMQTKGRPSAGTLIVCPTSVLRQWAEELQNKVTSRANLSVLLYHGSNRTKDPYMLAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGNSEVTACLPPSKKRKWPPSSRSGKKGLDRALLEASARPLAKVAWFRVVLDEAQSIKNYRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYNTFCSSIKIPINKNPNKGYKKLQAILKTIMLRRTKGTLLDGEPIITLPPKYVKLKKVDFSREERDFYSRLEADSRAQFQEYAKAGTVKENYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSVEMAKKLPCEKRTSLLKCLEASLALCGICNDPPEDAVVSACGHVFCNQCICEHLIGDDNQCPTTNCKDQLSMSSVFSRATLSCSLSDQASNSWVGCSGSEVEGYEPCSQSQPSDSSKIKAAVE 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0608 1109 MobiDBLite consensus disorder prediction 1084 1109 - -
Lele14g0608 1109 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 778 908 - -
Lele14g0608 1109 Gene3D - 548 648 IPR038718 -
Lele14g0608 1109 ProSitePatterns Zinc finger RING-type signature. 1027 1036 IPR017907 -
Lele14g0608 1109 Pfam SNF2-related domain 600 973 IPR000330 GO:0005524|GO:0140658
Lele14g0608 1109 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 463 1109 - -
Lele14g0608 1109 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 669 754 - -
Lele14g0608 1109 MobiDBLite consensus disorder prediction 751 784 - -
Lele14g0608 1109 MobiDBLite consensus disorder prediction 511 542 - -
Lele14g0608 1109 ProSiteProfiles Zinc finger RING-type profile. 1012 1051 IPR001841 -
Lele14g0608 1109 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 595 858 IPR014001 -
Lele14g0608 1109 Gene3D - 664 755 IPR038718 -
Lele14g0608 1109 SMART ultradead3 576 875 IPR014001 -
Lele14g0608 1109 MobiDBLite consensus disorder prediction 511 540 - -
Lele14g0608 1109 CDD DEXDc_SHPRH-like 580 896 - -
Lele14g0608 1109 MobiDBLite consensus disorder prediction 1084 1103 - -
Lele14g0608 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 565 896 IPR027417 -
Lele14g0608 1109 Gene3D - 787 908 IPR038718 -
Lele14g0608 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 904 974 IPR027417 -
Lele14g0608 1109 Pfam Zinc finger, C3HC4 type (RING finger) 1012 1049 - -
Lele14g0608 1109 SMART ring_2 1012 1050 IPR001841 -
Lele14g0608 1109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 997 1063 IPR013083 -
Lele14g0608 1109 SUPERFAMILY RING/U-box 1009 1055 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0608 Lele-ChrLele14 17539934 17547284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0608 463 1109 RAD5 or RAD16-like Gene Family AT1G61140 57.357 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele14g0608 SNF2_N 2.2e-69 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0706 13 19096834 19097718 Lele14g0608 14 17539934 17547284 CCT
Lele14g0603 14 17506180 17507046 Lele14g0608 14 17539934 17547284 CCT
Lele15g1776 15 10717805 10718683 Lele14g0608 14 17539934 17547284 CCT
Lele16g1808 16 10684273 10685139 Lele14g0608 14 17539934 17547284 CCT
Lele14g0608 14 17539934 17547284 Lele14g0601 14 17484312 17486554 CCT
Lele14g0608 14 17539934 17547284 Lele16g1810 16 10707624 10709850 CCT
Lele14g0608 14 17539934 17547284 Lele15g1771 15 10677334 10685472 hybridization
Lele14g0608 14 17539934 17547284 Lele16g1803 16 10640970 10649345 hybridization