Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0576 ATGGATCCTCAAGACTCCAATCAACAAGCTTATTCAACAAACTCCAACACCACCCTTGTTTCTTCCGATGATTTCACCTCACTATCATCTTCCAATGATCAATACTTCAGCATTGAGGTTGAATGCAAAGTCTTTTATTCTTTGAATGGTGTCATTGTAGATGGTGCTACTGATACCATTGAGTGTGGTATCACAATTGTCCCTACGCAGGACATAGAACCATTCATATACATGATTTTTTCTTATTTTGATGTTCCTGATAATGCTCAAGCTCGCATGGCAGCAAAAATCTTGGGATATGCAGAAGAAATCATGAATGAGGCGCCCAAGAACCAGCAGATTCTGGATATGTATATTGTTTTAGCGCATACTAGTCAAATTCCTCACTATAATGATGATGATATTGATGATTATTATGGTGCGGTTGTGGAGGAATCGATGAACGTGAATGGAAATATGAGGATTATTCCAGCAAGCGAGTCGTCCATTGAAGGACTGGAGAAGAAGATGATGAATGAAGATGAAGCTGGTGGTTTAGATAGAGAAGCTTTGCCTTTTTTCTTTCTTGAGTGCTCCAAATCTCTCCTCCTGCTCCATAACTCCATGGAGGATTTTGAACATTCATGTGAAGTATACCCAGCAGACACCAACACCCCAATTTCTGCAGATCATTTCATCTCATCTTCTTCAAGTGAACAATACTTTAGGATCGAAGTCGAATGCAAAAGCTATTTCGTTTTGGACGGTGTCGTTTCAGACCATTTCACTAGAGCGACTGAGTGTGGTTTCTCAAATATCCGAAAGCAAGATATAGAACAGTTCATAAATATGCTTTTGCCTTGTTTTAATGTTCCTGAGAATGCTCGAAATCGCACGGCAGCAAAAATCTTGGCATGTGCACATCACATGGCGAATGTGACGCACAAGAACCACAAGATTATGGGTATGCGTGTTATTATAACAAGTACTACTGAAGTTTATCAGTACGATTATCTTCTTCGTAGGTTTTCGGATGAATCATTTACGAGTTATGAAATTGAAGATCATCATCTGAGATCGATTCCTGCGAGCAAGTCATCGATTGAGAGATTGGAAAGGCTGAAGGTAGAAGAAGAACAAAAGGAAGAAGGGACTAGTATGATGGTGGGAAAACATTGTAACTGCAGAATTTGCTTGGACGATTTTTCAATTGATTCAGAAGCTATTCGCATGCCTTGCTTGCACTTGTTTCACAACAAATGCATCATGAATTGGTTAAAAAATCGCAACACTTGTCCTCTTTGTCGTTTAAAATTGCCTACAGATGATGATCATTGA 1317 0.3926 MDPQDSNQQAYSTNSNTTLVSSDDFTSLSSSNDQYFSIEVECKVFYSLNGVIVDGATDTIECGITIVPTQDIEPFIYMIFSYFDVPDNAQARMAAKILGYAEEIMNEAPKNQQILDMYIVLAHTSQIPHYNDDDIDDYYGAVVEESMNVNGNMRIIPASESSIEGLEKKMMNEDEAGGLDREALPFFFLECSKSLLLLHNSMEDFEHSCEVYPADTNTPISADHFISSSSSEQYFRIEVECKSYFVLDGVVSDHFTRATECGFSNIRKQDIEQFINMLLPCFNVPENARNRTAAKILACAHHMANVTHKNHKIMGMRVIITSTTEVYQYDYLLRRFSDESFTSYEIEDHHLRSIPASKSSIERLERLKVEEEQKEEGTSMMVGKHCNCRICLDDFSIDSEAIRMPCLHLFHNKCIMNWLKNRNTCPLCRLKLPTDDDH 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0576 438 FunFam E3 ubiquitin-protein ligase RNF181 344 435 - -
Lele14g0576 438 SMART ring_2 388 428 IPR001841 -
Lele14g0576 438 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 255 433 - -
Lele14g0576 438 ProSiteProfiles Zinc finger RING-type profile. 388 429 IPR001841 -
Lele14g0576 438 SUPERFAMILY RING/U-box 366 435 - -
Lele14g0576 438 SMART ringv_2 387 429 IPR011016 GO:0008270
Lele14g0576 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 342 435 IPR013083 -
Lele14g0576 438 Pfam Ring finger domain 387 429 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0576 Lele-ChrLele14 17273420 17277608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0576 330 436 C3H Transcription Factor Family AT5G01980 42.593 7.78e-18 83.6