Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0570 ATGGGTGAAGGAGAGGGAGGTAGAAAAGCTATAACAGACCAGGATTCGCCGGAATCGTTCGCCGGAGGTGGTTCCAGTATCCCTCGAGCTGTCAAGCTTATATCTTCCTTGATTTCTCTCTCCCATTCAGTCAGAGTCTTCGCGGCAAAATGGCAACTGATTCGGAACAAGCTCGAGGAGCTCCATTCAGGACTAATCGCCTCCGAGAACTGCTATTCCGGCGAGAACCAATCGCTCTCCGGTCTGGTTCCTGCGATACTGGCCACCGCGAACGACTGCCATGATCTCGTTCGCCGGTGCGTTGATCTTTCGTACAGCGGGAAGCTTTTGATGCAGAGCGATTTGGATGTGATGTTCGCCAGGTTCGCTTCTCACTCGAGGAAGCTATCAGAGGTATATTCAACTGGTATTTTGACTCACAAGTATGCCCTCGTTGTTTCGAGGCCTATTCTCGGAGCTTGCAAAGATGATATGAGGTTTTACATGAGGGACTTGCTGACGAGAATGAAGATTGGCGATGTGGGAATGAAGAGACAGGCTCTGATTAATCTGCACGAGGCTGTAGCGGAAGACGAAAAGTATGTGAAAGTGATTGTGGAAATAGGAGATATTGTTCATCTTCTGGTAAATTTTCTCGATTCACCGGAAATGGAAATCCAAGAAGAATCCGCCAAGGTGCTTTCTGTCATCGCAGGCTTTGATTCCTACAGAGGGGTTTTGATCACATCAGGGATTATTGCGCCTCTGATCCGAGTTTTGGAATGTGGGAGTGATTCAGGGAAGATCGGGGCTGCCAGGTGTTTGATGAGATTAACGTTCAATTCAGACAATGCTTGGTCGGTTTCAGCTCATGGGGGAGTCACGTGCTTGCTCAAAACCTGCTCTAATGGAGAACCCAAAGGAGAATTGGTTGGTCCTGCTTGTGGGGTACTGAGAAATCTTGTAGGTGTTGAAGAAATAAAGAGATTCATGGTTGAAGAAGGTGCGGTTTCTACGTTTATCAGGCTTGTAAAATCCAGGGATGAAGCGATTCAGGTAAATTCCATACAATTCATTCAAAGCATAGCCTCTGGAGATGAACAGATTAGGCAAATGGTGATTAGAGAAGATGGAATTCAGGCTTTATTACGCATTCTAGATCCTAAATGCTCATGTTCTTCCAAAACCAGGGAGATAGCAATGAGAGCTATTGAAAACTTGTGTTTTTCTTCCTCTAGTTCTGTAAGTATATTAATGAGTTATGGCTTTGTGGATCAACTGCTATATTATATTCGTAATGGGGAAGTTTCAATCCAAGAATTGGCTCTGAAAGTGGCCTTCAGATTCTGTGGAACATCAGAGGAAGCTAAGAAAGCCATGGGCGATGCAGGTTTCATGCCAGAACTTGTTAAGTTTCTAAATGCGAAATCATTCGAAGTTCGTGAAATCGCAGCTGAATCACTCTCTGCCTTGGTTATGGTGCCCAAGAACAGAAAGAAATTTGTGCAGGATGATCAAAACATAGCTCTTCTTCTCCAACTGCTTGATCCAGAAGAGGGAAATTCAGGTCACAAGAAGTTCCTAATCTCTATCTTAATGTCATTAACAAGTTGTAACAGTGGGAGAAAAAAGATTGTGAGTTCTGGTTATGCCAAAAACATAGAGAAACTTGCAGAAACTGAAGTTTCATCAGATGCCAAGAGGCTTGTGAGGAAGCTATCCAGAAACAGATTCCGCAGTATGTTGAGTGGAATCTGGCACTCATGA 1746 0.4444 MGEGEGGRKAITDQDSPESFAGGGSSIPRAVKLISSLISLSHSVRVFAAKWQLIRNKLEELHSGLIASENCYSGENQSLSGLVPAILATANDCHDLVRRCVDLSYSGKLLMQSDLDVMFARFASHSRKLSEVYSTGILTHKYALVVSRPILGACKDDMRFYMRDLLTRMKIGDVGMKRQALINLHEAVAEDEKYVKVIVEIGDIVHLLVNFLDSPEMEIQEESAKVLSVIAGFDSYRGVLITSGIIAPLIRVLECGSDSGKIGAARCLMRLTFNSDNAWSVSAHGGVTCLLKTCSNGEPKGELVGPACGVLRNLVGVEEIKRFMVEEGAVSTFIRLVKSRDEAIQVNSIQFIQSIASGDEQIRQMVIREDGIQALLRILDPKCSCSSKTREIAMRAIENLCFSSSSSVSILMSYGFVDQLLYYIRNGEVSIQELALKVAFRFCGTSEEAKKAMGDAGFMPELVKFLNAKSFEVREIAAESLSALVMVPKNRKKFVQDDQNIALLLQLLDPEEGNSGHKKFLISILMSLTSCNSGRKKIVSSGYAKNIEKLAETEVSSDAKRLVRKLSRNRFRSMLSGIWHS 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0570 581 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 285 329 IPR000225 GO:0005515
Lele14g0570 581 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 28 580 - -
Lele14g0570 581 Gene3D - 162 570 IPR011989 -
Lele14g0570 581 SUPERFAMILY ARM repeat 163 564 IPR016024 -
Lele14g0570 581 MobiDBLite consensus disorder prediction 1 23 - -
Lele14g0570 581 SMART arm_5 317 357 IPR000225 GO:0005515
Lele14g0570 581 SMART arm_5 191 232 IPR000225 GO:0005515
Lele14g0570 581 SMART arm_5 233 273 IPR000225 GO:0005515
Lele14g0570 581 SMART arm_5 359 402 IPR000225 GO:0005515
Lele14g0570 581 SMART arm_5 446 486 IPR000225 GO:0005515
Lele14g0570 581 SMART arm_5 274 316 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0570 Lele-ChrLele14 17220597 17222342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0570 145 435 U-box Gene Family AT2G23140 26.599 4.37e-13 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g1831 15 11188386 11191536 Lele14g0570 14 17220597 17222342 CCT
Lele16g1860 16 11121265 11127672 Lele14g0570 14 17220597 17222342 CCT
Lele13g0689 13 18953127 18968110 Lele14g0570 14 17220597 17222342 CCT
Lele14g0588 14 17359667 17369268 Lele14g0570 14 17220597 17222342 CCT
Lele15g1794 15 10865001 10874824 Lele14g0570 14 17220597 17222342 CCT
Lele16g1825 16 10826679 10837868 Lele14g0570 14 17220597 17222342 CCT
Lele14g0570 14 17220597 17222342 Lele15g1813 15 11035205 11036944 hybridization
Lele14g0570 14 17220597 17222342 Lele16g1842 16 10981457 10983430 hybridization