Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0513 ATGGGAAGAGGGAAGATTGCGATTCGAAGGATCGAGAATTCGACGAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCTAGAGAGCTATCAGTTCTTTGTGACGCAGAAGTTGGATTGATCGTCTTCTCTAGCACGGGCAAGCTCTATGACTTTGCAAGCACCAGCATGAAATCTGTTATTGAGCGCTACAACAAGGTTAAAGAGGAACATCTGATGCTTATGAATCCTGCTTCAGAAGTCAAGCTTTGGCAGAGAGAAGTAGCAAGCCTGAGGCAACAACTACAGTACTTGCATGATTATCACAGGCAACTGATGGGCGAAGAACTTTCTGGTTTGGGAATTAACGAACTACAAAATCTGGAAAACCAACTAGAGATGAGTTTGAAGGGTGTCCGCACAAGGAAGGATCAAATTTTAAATGGCGAGATTAAGGAACTACACCAAAAGGGGAATCTCATGCATGAAGAAAATGCGCAGCTTCATAAAAAGTTAGACATCATCCAAAAAGAAAATGAAGAACTGAGAAAGAAGGTTTTTGAAGCACAAAGCATGAATGAAGAAAATGGGACATCCAATCCTTCGTACACTATAAGGAACGGATATGATTTACATGGACTAATCGGCCTCCAGCTAAGCCAGCCGCAGTCTCAATACAATGAACAACCAACCAACACAATAAAACTGGGATTACAGCAGCATAAGCCGAAGCCAGTTGACAATCAAGGTTGGTTGTCTGACAACAAGCTGTCAACAACCAGGTCCTGA 783 0.4253 MGRGKIAIRRIENSTSRQVTFSKRRNGLLKKARELSVLCDAEVGLIVFSSTGKLYDFASTSMKSVIERYNKVKEEHLMLMNPASEVKLWQREVASLRQQLQYLHDYHRQLMGEELSGLGINELQNLENQLEMSLKGVRTRKDQILNGEIKELHQKGNLMHEENAQLHKKLDIIQKENEELRKKVFEAQSMNEENGTSNPSYTIRNGYDLHGLIGLQLSQPQSQYNEQPTNTIKLGLQQHKPKPVDNQGWLSDNKLSTTRS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0513 260 Coils Coil 163 193 - -
Lele14g0513 260 MobiDBLite consensus disorder prediction 238 260 - -
Lele14g0513 260 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Lele14g0513 260 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele14g0513 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele14g0513 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele14g0513 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele14g0513 260 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Lele14g0513 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 195 - -
Lele14g0513 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele14g0513 260 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Lele14g0513 260 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele14g0513 260 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele14g0513 260 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele14g0513 260 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lele14g0513 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele14g0513 260 Coils Coil 120 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0513 Lele-ChrLele14 16768291 16779336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0513 1 236 MADS-box Gene Family AT2G14210 59.916 3.19e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele14g0513 K-box 2.3e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0513 14 16768291 16779336 Lele14g0507 14 16705571 16710812 CCT
Lele14g0513 14 16768291 16779336 Lele16g1904 16 11480703 11483657 CCT
Lele14g0513 14 16768291 16779336 Lele15g1871 15 11492422 11502827 hybridization