Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0509 ATGGCTTCTTTCTGGTTCTTCACTCTCCTTCTTAAATGCGTCGACTATCTTTCATGGCCCGTGCTTGCTTTGGGTTATCCTCTATGTATTTCCATTGAAGCAATTGAGAATGATAACCATTCAGACACTCGGAATTTGATCTCTTATTGGATTCTTCTCTCACTGATATACCTCTTCGAGTATATTTTTCTCGCGATTCTTCAATGGTTTCAGTATTGGCATTACACGAAGCTAATGATCGTCGCCTTCCTCGTGATGCCGGACTTTGGGAGAGCTTCTTATGTCTATAATCACCTCATTCGATCATGCATCTACATGAATCCACAAACAGTCATAAGCAGATTAAGGAACTGGAACAAGATATTTGTCAAGAAAGAAGACTTTATAATGCAGGCTGAGAAGTACATAACACAGAATGGAACTAAAGCCTTAGAAAAACTCATTGCCAGCAAGAACACACAACAAAGAGTTGTTCATGCAGAAACAAGAGAAGCAGATCCAACTGCAGAGAAGAATGAGATCCTGAAGACAAATAGAGGAAGGCTTCTCATGGAACAGAAAGACATCAGAGATTTGGAGATGATTGAAAAAGAGCAACTTCCTGAAGGCAAACAAGTTGATACAGCCTTGGGCAGCCTAAAATCAAACGAAAGCACTTCATCTGCCATGGCGGAAACCGAAAAAACGGCGGTAGACACAGAACGCGGAACATATCCTCAGGTTTCAGCATCTGAGAATGTACAGAAAGAGTGGACTTGTGCCATATGCCAATTGACAATGCCTTCTGAAGCTAAGTTGAATTCCCACCTGCAAGGAAGAAGACACAAGGCTGCTTGCGAAGCACTGAACACGAAAAAAAAAGCGACGACGGTGAAAGACACAGGAAGCGGAGCATCTGCTCAGGTTTCTGGATCTTCAAATGAACAACAGACAAAGTGGACTTGTGAGATATGCCAATGGACATTTCCTTCTGAGGCTATTTTGAAGTCTCACATGTATGGAAAGAAGCATAAGGCTGCTTGCGAAGCTCTGGAGGCGAAAAACCAGCTTCTTGCTGAGATTTTTCTGAAGAAGGATGATAAGTCCATTGGAGGACAAGAGAAGACAATAAATACTCCATATGCAATACAACAGAAGAACAGTTGCAGAGTAAGATGTGAGATGTGTAATGTAAATTGCTCTAGTGAAATTGCCTTGGCTTCTCACTTACAGGGTAAGAAGCACTTGGCTCAGAGTCAATTACTAAGTGGTCCTTGA 1257 0.4193 MASFWFFTLLLKCVDYLSWPVLALGYPLCISIEAIENDNHSDTRNLISYWILLSLIYLFEYIFLAILQWFQYWHYTKLMIVAFLVMPDFGRASYVYNHLIRSCIYMNPQTVISRLRNWNKIFVKKEDFIMQAEKYITQNGTKALEKLIASKNTQQRVVHAETREADPTAEKNEILKTNRGRLLMEQKDIRDLEMIEKEQLPEGKQVDTALGSLKSNESTSSAMAETEKTAVDTERGTYPQVSASENVQKEWTCAICQLTMPSEAKLNSHLQGRRHKAACEALNTKKKATTVKDTGSGASAQVSGSSNEQQTKWTCEICQWTFPSEAILKSHMYGKKHKAACEALEAKNQLLAEIFLKKDDKSIGGQEKTINTPYAIQQKNSCRVRCEMCNVNCSSEIALASHLQGKKHLAQSQLLSGP 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0509 418 SMART ZnF_U1_5 310 344 IPR003604 GO:0003676|GO:0008270
Lele14g0509 418 SMART ZnF_U1_5 381 415 IPR003604 GO:0003676|GO:0008270
Lele14g0509 418 SMART ZnF_U1_5 248 282 IPR003604 GO:0003676|GO:0008270
Lele14g0509 418 ProSitePatterns Zinc finger C2H2 type domain signature. 315 337 IPR013087 -
Lele14g0509 418 Pfam Zinc-finger of C2H2 type 251 275 - -
Lele14g0509 418 Pfam Zinc-finger of C2H2 type 313 337 - -
Lele14g0509 418 Pfam Zinc-finger of C2H2 type 385 408 - -
Lele14g0509 418 SUPERFAMILY beta-beta-alpha zinc fingers 383 414 IPR036236 -
Lele14g0509 418 SMART c2h2final6 313 337 IPR013087 -
Lele14g0509 418 SMART c2h2final6 384 408 IPR013087 -
Lele14g0509 418 SMART c2h2final6 251 275 IPR013087 -
Lele14g0509 418 Gene3D Classic Zinc Finger 228 281 - -
Lele14g0509 418 Gene3D Classic Zinc Finger 366 414 - -
Lele14g0509 418 Gene3D Classic Zinc Finger 285 343 - -
Lele14g0509 418 SUPERFAMILY beta-beta-alpha zinc fingers 244 285 IPR036236 -
Lele14g0509 418 MobiDBLite consensus disorder prediction 214 235 - -
Lele14g0509 418 PANTHER OS06G0651300 PROTEIN-RELATED 284 415 - -
Lele14g0509 418 SUPERFAMILY beta-beta-alpha zinc fingers 300 349 IPR036236 -
Lele14g0509 418 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
Lele14g0509 418 ProSitePatterns Zinc finger C2H2 type domain signature. 386 408 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0509 Lele-ChrLele14 16726304 16729174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0509 178 415 C2H2 Transcription Factor Family AT5G61190 25.911 7.71e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele14g0509 TB2_DP1_HVA22 4.4e-17 No_clan