Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0503 ATGGGAAGCAGCTTTCTCGCTCCACCAGTGAAGAAGCGTTCGATATGGTACCCTGAAACTGGTTCGGCCGACCCGAACCCGTATGCATCAAATGGGTCAACCAAGCGCTCCAAGTCCAAGCACCCACCGCCTCCACTCAGTATCCCCCCAGGTCATATCGCTTTCCGATTGCTCTGCCAAGCTTCCCGAATTGGCGGCATAATTGGCAAGTCCGGCTTTGTCATACAGAACCTCCAGAAAGTTACGGGGGCCAAGATCCGCGTCGAAGATGCCCCATCCGAATCACCGGACAGGGTCATTATTGTGATTGCGCCGAGTGCTCTCAGCAGCAAGGTTTTTCTGAGACCCCAGAGTCAGAATTCGGATTCGGAACCGTCCGAGGAAGATGACGATAATGGAGATGACGAGGGCGAAGGTGCAGCTGTTGAGGTATCAAAAGCTCAGAAAGCACTGTTGAAGGTGTTCGAGAGGATTCTGGATGTTGCGGCGGAGACTGAGGGCATTAGAGTGGAGGATGGATTAGTGTCCTGTAGGCTGCTGGCGGATGCGGCACAGGTTGGGGCAGTCATTGGGAAGGGAGGGAAGGTGGTGGAGAAGATTAGGGAGGACAGTGGATGTAAAGTAAAAGTTTTGGCAGACAAGTTGCCTCCTTGCACTGCCCCGTCCGACGTAATGATTGATATAGAAGGCCATGTGCAGTCTGTAAAGAAGGCACTTCTTGCTGTTTCTCGCCGTCTTCAAGATTTCCCTCCACCCAGCAAGACAAAGATGATGGCAAGCAAGCCTCATGAAGTGGTTCAACATGAAAGCTTAGTCTCAGTTCCACATGATACTTTAACTGTAGTTCCACGTGAGACTTTGCCTAATCTGCATGCAGACCATCTTCTGCAGAGAGGCTCTGTGGTATCTACAATACCCAGCAGCTATGCTTCAGGAGTTCATTCAGTGTCACCTGAGGTAAACAGAGTCTCTACCCTGGATCCAACAACACTTAAGCAGGAAGTTTCCTTTAGAATTCTTTGCCCCAGTGATAGGGTTGGTGGTGTAATTGGTAAAGGTGGCAGTATTGTCAGAGCCCTTCAGAATGAGACTGGGGCTACTATAAATATCGGTCCTTCAGTGGAAGAATGTGAGGACAGATTGATTAGTGTTACTGCTTCTGAGCATCTTGAATCAAGATATTCCCCAGCGCAGAAGGCTGTTGTCCTTGTTTTCTCCAGGTCTGTAGAAGCAGGCGTTGAGAAGGGGCTAGACTCAGGATCAAAGGGGTCATCTGTTACTGCAAGACTCGTGGTCTCATCAAACCAAGTTGGCTGTTTATTGGGAAAAGGAGGATCAATAATCACGGAAATGCGGAAGGCAACTGGTGCTAGCATAAAAATAATGGGGACCGACCAGGCTCCAAAGTGTGCATCACAGAACGATCAATTAATTCAGATATCTGGAGCGTTTTCGAATGTTCAAGATGCGTTGTATAATGCAACTGGCAGATTGCGAGATAATCTTTTTAACAGCACACAGAACAGTGTTGGAACAAAAACCATTACCTCTGTATTACCTGATACCAGTCCTCGTGGGAGATTGAGGGATCCGGTTCCTAATGGTGTCCAACCGGTCATTGGTGTTTCTCATAGTCTGAGTAGACATACGACGTCACAAAACATAGATCAAGTTGTTTCTCGCTATTTAGATCACCCCTCTTCACCAGGGTCAAGGGCACCACGGACGGTTTCTGGGATAAACTCGAGAGGCGTAAATGATGTTGGCAGGGGATTGACTTCTCTAAAAGGTGGCTTAGAGCTTGGCAGCGGAAGCAAAATTGCCATGGTGACTAATACAACTGTGGAAATTGTTGTTCCTGATGATGTCATTGGCTCGGTATATGGGGGAAATGGTAGCAATTTGGCTCGTCTGAGAAAGATTTCAGGTGCCAAGGTTATTGTCCATGAACCTCGTCCAGGAACAAGAGACAGGACCATTGTCATATCTGGTACGCCTGATGAAACCCAAGCGGCTCAGAGCCTTCTTCAAGCATTTATCCTCACAGGTTCTTCATGA 2058 0.4825 MGSSFLAPPVKKRSIWYPETGSADPNPYASNGSTKRSKSKHPPPPLSIPPGHIAFRLLCQASRIGGIIGKSGFVIQNLQKVTGAKIRVEDAPSESPDRVIIVIAPSALSSKVFLRPQSQNSDSEPSEEDDDNGDDEGEGAAVEVSKAQKALLKVFERILDVAAETEGIRVEDGLVSCRLLADAAQVGAVIGKGGKVVEKIREDSGCKVKVLADKLPPCTAPSDVMIDIEGHVQSVKKALLAVSRRLQDFPPPSKTKMMASKPHEVVQHESLVSVPHDTLTVVPRETLPNLHADHLLQRGSVVSTIPSSYASGVHSVSPEVNRVSTLDPTTLKQEVSFRILCPSDRVGGVIGKGGSIVRALQNETGATINIGPSVEECEDRLISVTASEHLESRYSPAQKAVVLVFSRSVEAGVEKGLDSGSKGSSVTARLVVSSNQVGCLLGKGGSIITEMRKATGASIKIMGTDQAPKCASQNDQLIQISGAFSNVQDALYNATGRLRDNLFNSTQNSVGTKTITSVLPDTSPRGRLRDPVPNGVQPVIGVSHSLSRHTTSQNIDQVVSRYLDHPSSPGSRAPRTVSGINSRGVNDVGRGLTSLKGGLELGSGSKIAMVTNTTVEIVVPDDVIGSVYGGNGSNLARLRKISGAKVIVHEPRPGTRDRTIVISGTPDETQAAQSLLQAFILTGSS 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0503 685 Gene3D K Homology domain, type 1 608 682 IPR036612 GO:0003723
Lele14g0503 685 MobiDBLite consensus disorder prediction 16 47 - -
Lele14g0503 685 MobiDBLite consensus disorder prediction 123 138 - -
Lele14g0503 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 43 105 IPR036612 GO:0003723
Lele14g0503 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 330 387 IPR036612 GO:0003723
Lele14g0503 685 SMART kh_6 424 499 IPR004087 GO:0003676
Lele14g0503 685 SMART kh_6 333 409 IPR004087 GO:0003676
Lele14g0503 685 SMART kh_6 611 681 IPR004087 GO:0003676
Lele14g0503 685 SMART kh_6 173 247 IPR004087 GO:0003676
Lele14g0503 685 SMART kh_6 51 163 IPR004087 GO:0003676
Lele14g0503 685 CDD PCBP_like_KH 427 492 - -
Lele14g0503 685 ProSiteProfiles Type-1 KH domain profile. 612 676 - -
Lele14g0503 685 MobiDBLite consensus disorder prediction 24 40 - -
Lele14g0503 685 Pfam KH domain 427 491 IPR004088 GO:0003723
Lele14g0503 685 Pfam KH domain 614 677 IPR004088 GO:0003723
Lele14g0503 685 Pfam KH domain 337 388 IPR004088 GO:0003723
Lele14g0503 685 Pfam KH domain 177 241 IPR004088 GO:0003723
Lele14g0503 685 Pfam KH domain 56 104 IPR004088 GO:0003723
Lele14g0503 685 CDD PCBP_like_KH 176 243 - -
Lele14g0503 685 ProSiteProfiles Type-1 KH domain profile. 425 498 - -
Lele14g0503 685 CDD KH-I 614 677 - -
Lele14g0503 685 ProSiteProfiles Type-1 KH domain profile. 52 102 - -
Lele14g0503 685 CDD PCBP_like_KH 55 105 - -
Lele14g0503 685 CDD PCBP_like_KH 336 405 - -
Lele14g0503 685 ProSiteProfiles Type-1 KH domain profile. 174 242 - -
Lele14g0503 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 421 501 IPR036612 GO:0003723
Lele14g0503 685 ProSiteProfiles Type-1 KH domain profile. 334 401 - -
Lele14g0503 685 MobiDBLite consensus disorder prediction 113 140 - -
Lele14g0503 685 Gene3D - 123 250 - -
Lele14g0503 685 Gene3D - 333 501 - -
Lele14g0503 685 MobiDBLite consensus disorder prediction 563 585 - -
Lele14g0503 685 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 330 676 - -
Lele14g0503 685 Gene3D K Homology domain, type 1 53 112 IPR036612 GO:0003723
Lele14g0503 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 612 680 IPR036612 GO:0003723
Lele14g0503 685 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 173 250 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0503 Lele-ChrLele14 16667227 16673861 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0603 13 18211324 18213658 Lele14g0503 14 16667227 16673861 CCT
Lele15g1880 15 11568083 11570541 Lele14g0503 14 16667227 16673861 CCT
Lele14g0503 14 16667227 16673861 Lele15g1878 15 11556049 11562012 hybridization
Lele14g0503 14 16667227 16673861 Lele16g1909 16 11510398 11516930 hybridization