Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0493 ATGACTGAGCTCGAAGCTTCTCGCTCCGACAAGAAGAAGAAGAAGCACCGTAACAAAGACGAAGCAGCTGACGTCCAAGGTTCCGACTTCCTGATCAAACCCCAGAGCTACACTCCCACCATTGACACCTCTCAGTGGCCTATTCTCCTCAAGAACTACGACCGTCTCAATGTGCGAACCGGACACTACACTCCTATTCCCTCCGGTTTCTCCCCTCTTAAGCGACCTCTTCCCGAGTACATCAAGTACGGTATCATGAATCTCGATAAACCCGCGAACCCCTCCTCCCACGAGGTCGTCGCTTGGATTAAACGGATTCTCCGGGTCGAGAAAACGGGTCACAGTGGTACTCTTGATCCTAAGGTCACTGGCAACCTCATAGTTTGCATCGATAGAGCCACGCGCTTGGTGAAGTCGCAGCAGGGTGCTGGTAAAGAGTACGTTTGTGTCGCTCGATTGCACTCTGCAGTGCCTGATGTTGCGAAGGTGGTTCGTGCGCTTGAGACGCTTACTGGAGCTGTGTTTCAGCGGCCGCCGTTGATTTCTGCGGTGAAGAGGCAGCTTAGGATCAGAACAATATATGAAAGTAAGCTTCTTGAGTATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCCTGTGAGGCAGGTACGTATGTGAGGACTCTCTGTGTCCATTTGGGATTGATTCTTGGTGTGGGAGGCCATATGCAGGAGCTTAGAAGGGTGCGTTCAGGTATTTTGGGTGAGAAAGATAACATGGTTTCAATGCATGACGTGTTGGATGCTCAATGGGTTTATGATAACTATAGAGATGAGAGTTATTTGAGAAGGGTTATTATGCCTTTGGAAGTATTATTAACGAGTTATAAGAGATTAGTTGTTAAGGATTCTGCTGTTAATGCTATTTGTTATGGAGCGAAGCTTATGATTCCTGGGTTACTAAGGTTTGAAAATGATATTGAGGTTGGGGAGGAGGTGGTGCTAATGACTACCAAAGGTGAAGCTATTGCATTGGGAATTGCAGAGATGACTACTTCTGTAATGGCTACTTGTGATCATGGTGTGGTAGCAAAGATCAAAAGAGTGGTTATGGATAGAGATACCTATCCAAGGAAATGGGGTTTAGGACCAAGAGCATCCATGAAGAAGAAGTTGATTGCAGAAGGGAAGCTAGATAAGCGGGGGAAGCCCAATGAGAATACTCCTCAAGAGTGGCTGAGGAATGTAGTTTTACCGACTGGTGGGGATTCTGTCATTGCCGGTATGCATGCCTCCACTGAACCAGATGCCAACAAGGAGAATGCTTTAGTTGAGAGCAAGGAGGATGGGAAAGAGCGTAAAAGAAAACTGCTTGAAAGCACCGATCCTGCTCCAGTGCCCACTAAGAAGTCTAAAACTAAAGAAGTTGAAGAAGCTGAAACGGAAGAAGTAGTGAAGATCAAGAAGTTAAAAGAGGATGTAGTGGAGATTGAAGTTGATAAGAAAGAGAAGAAGAAGAAGAAGAAGAAGGATAAGGATGCTGTTGAAGCAGAGGCTGGTTCACCAGATGTGGAGAAGTCTGAGAAGAAGAAAAAGAAACACAAAGAAAAGACAGAAGCTGAAGCTGCTTCGCCTGATGTGGAGAAGTCAGAGAAGAAGAAAAAGAAACACAAAGAAAAGACAGAAGCTGAAGCTGCTTCACCTGACGTGGAGAAGTCAGAGAAGAAGAAGAAGAAGGAGAAGGAAGCTGAAAATAATGCTGCTGAGGTCAATGGGAAGGCTGATGATGATGTAGAGAAAAGTGAGAAGAAGAAGAAGAAGAAGCATAATAAGAAAAGTGAAGATGCAGAGGAGGAATAA 1842 0.4517 MTELEASRSDKKKKKHRNKDEAADVQGSDFLIKPQSYTPTIDTSQWPILLKNYDRLNVRTGHYTPIPSGFSPLKRPLPEYIKYGIMNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVVRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVSMHDVLDAQWVYDNYRDESYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAEGKLDKRGKPNENTPQEWLRNVVLPTGGDSVIAGMHASTEPDANKENALVESKEDGKERKRKLLESTDPAPVPTKKSKTKEVEEAETEEVVKIKKLKEDVVEIEVDKKEKKKKKKKDKDAVEAEAGSPDVEKSEKKKKKHKEKTEAEAASPDVEKSEKKKKKHKEKTEAEAASPDVEKSEKKKKKEKEAENNAAEVNGKADDDVEKSEKKKKKKHNKKSEDAEEE 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0493 613 Pfam DKCLD (NUC011) domain 43 100 IPR012960 -
Lele14g0493 613 Gene3D PUA domain 43 374 IPR036974 GO:0003723
Lele14g0493 613 SMART pua_5 291 365 IPR002478 GO:0003723
Lele14g0493 613 Coils Coil 481 501 - -
Lele14g0493 613 Pfam tRNA pseudouridylate synthase B C-terminal domain 221 287 IPR032819 -
Lele14g0493 613 Coils Coil 593 613 - -
Lele14g0493 613 Pfam PUA domain 291 363 IPR002478 GO:0003723
Lele14g0493 613 MobiDBLite consensus disorder prediction 1 27 - -
Lele14g0493 613 SMART DKCLD_2 42 100 IPR012960 -
Lele14g0493 613 Gene3D Pseudouridine synthase 76 282 - -
Lele14g0493 613 MobiDBLite consensus disorder prediction 434 454 - -
Lele14g0493 613 FunFam H/ACA ribonucleoprotein complex subunit CBF5 76 282 - -
Lele14g0493 613 TIGRFAM CBF5: putative rRNA pseudouridine synthase 50 375 IPR004802 GO:0006396
Lele14g0493 613 TIGRFAM unchar_dom_2: uncharacterized domain 2 286 362 IPR004521 GO:0003723
Lele14g0493 613 MobiDBLite consensus disorder prediction 462 597 - -
Lele14g0493 613 CDD PseudoU_synth_hDyskerin 82 264 - -
Lele14g0493 613 ProSiteProfiles PUA domain profile. 290 365 - -
Lele14g0493 613 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 8 555 IPR004802 GO:0006396
Lele14g0493 613 SUPERFAMILY Pseudouridine synthase 43 288 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lele14g0493 613 SUPERFAMILY PUA domain-like 290 371 IPR015947 -
Lele14g0493 613 Coils Coil 565 587 - -
Lele14g0493 613 MobiDBLite consensus disorder prediction 417 613 - -
Lele14g0493 613 MobiDBLite consensus disorder prediction 1 26 - -
Lele14g0493 613 Pfam TruB family pseudouridylate synthase (N terminal domain) 104 220 IPR002501 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0493 Lele-ChrLele14 16590818 16592659 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0493 14 16590818 16592659 Lele15g2152 15 14437195 14441909 hybridization
Lele14g0493 14 16590818 16592659 Lele16g2181 16 17196739 17203342 hybridization