Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0490 ATGGCGTCTCTCAATTTCTCCTATTATTCTCCAGCATCTCTCTCGCGTCCTCGGGCACGCCAACATTTAAAATTGTTCAATGGGTTGCATTCTATTAATGGACTCGGATGTGATTTGGCAATTGTTCGATTAAATTCTAAATTCTTGCAAAGTGACAAGATTGTTGGTAGAATCAAGGCAACTCTGATATCTGGAGGAGATGACCTTGTCTTAAATTCAAATGGAAATAATGTTGAGAAACAACCCGGGGCAATTGGACATGGAACACTCGCAGCTAATACAGTGGCAACAAGCATTGGTTTTCCTGTTGACAATGATGATAAAGATGAATTTGACAGCCCCACAGAAGGTTTTGCTTCCATCCCTGAGGCTATTGAGGATATTCGCCAGGGAAAGATGGTATTGGTTGTAGATGATGAGGACAGGGAAAATGAAGGAGATTTGATAATGGCTGCACAGTTGGCAACACCTGAGGCTATGGCTTTTCTTGTGAAGCATGGAACTGGGATAATTTGTGTAAGCATGAAAGAGGAAGATCTGGAGAGATTGGAACTTCCTTTGATGGTAGACAGTAAGGATAATGATGAGAAACTTCGTACTGCATTTACTGTGACAGTGGATGCTAAACGAGGTACCACCACAGGGGTATCAGCAGCTGATAGGGCAACAACAGTCTTGGGTCTTGCATCCAGAGATTCAAAACCGTCTGATTTTAATCGCCCAGGCCACATATTTCCATTAAAATATCGGGAAGGTGGTGTCTTGAAAAGAGCTGGGCATACAGAAGCTTCAGTTGATCTTGCCATACTTGCTGGTTTGGAACCTGTGGCAGTTCTATGTGAAGTTGTAGATGATGATGGTTCCATGGCTAGATTGCCAAAGCTTCGCCAGTTTGCAGAGTGTGAAAACTTGAAAATAATTTCTATTGCTGACTTAATAAGATATAGGATGAAGAGAGATAAATTGGTAGTTCTTGCTGGTGCTGCGCAAATACCTACAATGTGGGGGCCATTCACAGCTTACTGTTACAGGTCAATTTTAGACGGGATGGAACATATTGCAATGGTTAAGGGTGACATTGGGGATGGAAAAGATGTTCTCGCGAGGGTGCACTCTGAGTGTCTCACTGGAGATATATTTGGATCTGCCAGATGCGACTGTGGGAATCAGCTAGGGCTCGCGATGCAGCAGATTGAGGCTGTTGGTAGGGGTGTCCTGATATATCTCCGAGGACACGAAGGAAGAGGTATTGGGCTTGGCCACAAGCTTCGTGCATATGACTTGCAGGATGATGGACGAGATACTGTTGAAGCCAATGAGGAGTTGGGTTTGCCTGTTGACTCGAGGGAATATGGTATCGGTGCACAGATGTTGAGGGATTTGGGTGTTCGATCAATGAGGCTGATGACGAACAATCCGGCAAAATACGTGGGGCTCAAAGGTTATGGTTTGACAATTTCTGGTCGGATCCCATTAGTAACCCTGATCACAAAGGAAAACCGGAGGTATTTGGAGACAAAACGTGCCAAAATGGGACACATTTATGGTTTGGACTTCAACGACCAGTTGAGCAGTTACGCCACAGGCAATGGTAAAGTCAATGCCGATGATTCTAATAATGCTGTTCCTGGCTCATGA 1638 0.4432 MASLNFSYYSPASLSRPRARQHLKLFNGLHSINGLGCDLAIVRLNSKFLQSDKIVGRIKATLISGGDDLVLNSNGNNVEKQPGAIGHGTLAANTVATSIGFPVDNDDKDEFDSPTEGFASIPEAIEDIRQGKMVLVVDDEDRENEGDLIMAAQLATPEAMAFLVKHGTGIICVSMKEEDLERLELPLMVDSKDNDEKLRTAFTVTVDAKRGTTTGVSAADRATTVLGLASRDSKPSDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAILAGLEPVAVLCEVVDDDGSMARLPKLRQFAECENLKIISIADLIRYRMKRDKLVVLAGAAQIPTMWGPFTAYCYRSILDGMEHIAMVKGDIGDGKDVLARVHSECLTGDIFGSARCDCGNQLGLAMQQIEAVGRGVLIYLRGHEGRGIGLGHKLRAYDLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRSMRLMTNNPAKYVGLKGYGLTISGRIPLVTLITKENRRYLETKRAKMGHIYGLDFNDQLSSYATGNGKVNADDSNNAVPGS 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0490 545 CDD GTP_cyclohydro2 322 514 IPR000926 GO:0003935|GO:0009231
Lele14g0490 545 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 123 315 IPR000422 GO:0008686|GO:0009231
Lele14g0490 545 Gene3D GTP cyclohydrolase II 324 494 IPR036144 -
Lele14g0490 545 SUPERFAMILY YrdC/RibB 117 319 IPR017945 -
Lele14g0490 545 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 109 322 - -
Lele14g0490 545 Pfam GTP cyclohydrolase II 328 491 IPR032677 -
Lele14g0490 545 FunFam Riboflavin biosynthesis protein RibBA 323 494 - -
Lele14g0490 545 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 116 320 IPR000422 GO:0008686|GO:0009231
Lele14g0490 545 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 117 513 IPR016299 GO:0009231
Lele14g0490 545 TIGRFAM ribA: GTP cyclohydrolase II 329 514 IPR000926 GO:0003935|GO:0009231
Lele14g0490 545 Gene3D DHBP synthase 105 323 - -
Lele14g0490 545 SUPERFAMILY RibA-like 322 492 IPR036144 -
Lele14g0490 545 Hamap GTP cyclohydrolase-2 [ribA]. 321 517 IPR000926 GO:0003935|GO:0009231
Lele14g0490 545 TIGRFAM ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 119 316 IPR000422 GO:0008686|GO:0009231
Lele14g0490 545 PANTHER GTP CYCLOHYDROLASE II-RELATED 116 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0490 Lele-ChrLele14 16575471 16580437 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0600 13 18198190 18200563 Lele14g0490 14 16575471 16580437 CCT
Lele14g0490 14 16575471 16580437 Lele14g0490 14 16575471 16580437 ECH
Lele14g0490 14 16575471 16580437 Lele15g1893 15 11653150 11658617 hybridization
Lele14g0490 14 16575471 16580437 Lele16g1925 16 11614008 11618962 hybridization