Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0466 ATGTCTCACTTTGGAAGGTCGGGTCCTCCAGACATCACGGACACATATTCGCTTCTGGTGCTCAACATCACATTCCGTACAACCGCTGATGACCTGTTTCCCCTGTTCGATAAGTATGGCAAGGTCGTCGACATCTTTATTCCCAGAGACCGAAGGACTGGTGAATCAAGGGGTTTTGCATTTGTGCGTTATAAGTATGCTGACGAGGCACAAAAGGCTGTGGACAGGCTGGACGGAAGAGTGGTTGATGGCCGCGAGATAACTGTTCAGTTTGCAAAATATGGGCCTAATGCAGAGAGGATTCACAAAGGAAAGATTAGTGAAACGTTCCCCAAGTCTAGATACAGGTCAAGGAGCCGCAGCCCCAGGAGAAGGCATCGTGATGATTACAGGGACAGGGATTATAGGAGGAGGAGTCGCAGCAGGAGTTATGATAGGTATGAAAGGGATAGGTATCGTGGAAGAGACAGAGATTATCGTCGCAGGAGTAGGAGCCGTAGTGCAAGTGCTGATTACCATAAGAGTCGTGGAAGGGATCGCTATGATGATGAGCGTCGAAGCCGAAGCAGAAGCCGATCTGTGGATAGTCGCTCCCCACGACGTAGTCTTAGTCCTCGAAGGAGTCCTTCACCTCAAAGGAGTGCTTCACCTCAAAGAAGTATTTCCCCAAGGAGGAGCTCAAGGGGTGAAAGCCCTGAGAGTCGTAGTCGTGATGGACGATCACCTACACCTCGCAGTGTTTCACCACGTGGTCAACCCAAGGACTCAAGAAGCCCATCCCCTCAAAATTCCAATGGAGATGAATGA 807 0.5006 MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNAERIHKGKISETFPKSRYRSRSRSPRRRHRDDYRDRDYRRRSRSRSYDRYERDRYRGRDRDYRRRSRSRSASADYHKSRGRDRYDDERRSRSRSRSVDSRSPRRSLSPRRSPSPQRSASPQRSISPRRSSRGESPESRSRDGRSPTPRSVSPRGQPKDSRSPSPQNSNGDE 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0466 268 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Lele14g0466 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Lele14g0466 268 SMART rrm2_1 17 90 IPR003954 GO:0003676
Lele14g0466 268 MobiDBLite consensus disorder prediction 241 268 - -
Lele14g0466 268 SUPERFAMILY RNA-binding domain, RBD 9 100 IPR035979 GO:0003676
Lele14g0466 268 SMART rrm1_1 17 90 IPR000504 GO:0003723
Lele14g0466 268 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 232 - -
Lele14g0466 268 MobiDBLite consensus disorder prediction 100 268 - -
Lele14g0466 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Lele14g0466 268 MobiDBLite consensus disorder prediction 100 115 - -
Lele14g0466 268 MobiDBLite consensus disorder prediction 125 202 - -
Lele14g0466 268 MobiDBLite consensus disorder prediction 203 225 - -
Lele14g0466 268 MobiDBLite consensus disorder prediction 226 240 - -
Lele14g0466 268 Gene3D - 4 105 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0466 Lele-ChrLele14 16271970 16274880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0466 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.443 1.10e-09 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0466 14 16271970 16274880 Lele15g1921 15 11951889 11954777 hybridization
Lele14g0466 14 16271970 16274880 Lele16g1949 16 11867825 11870730 hybridization