Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0440 ATGTCAGAAGTGGATGAGTACCGTTGCTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGCTGAAGGATGCATTTGAAAAGTTCGGCAAACTTCTTGAGGCAAAGGTGGTCGTTGACAAATTCTCTGGGCGCTCTCGTGGTTTTGGATTTGTTACATTTGATGAAAAGAAAGCAATGGAAGAGGCTATTGAGGCTATGAATGGGATGGATTTAGATGGTCGAAATATCACTGTTGATAAAGCACAGCCTCAACAAGGATCTACTAGAGATGATGGTGGTGATCATTACCGTGAAAGGGGCCGCGATCGTGACCGAGATTATAGAGGTGGTCGAAACTCCAATGGTGGTGAATGTTTTAAATGTGGTAAGCCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGAGCAGGGGGCAGGTCTGGTGGCAGGGAAAGTAGATATGGTGGTAGGAGTGGTGGTGGTGGACACTATGGTCCTGATAGGAATGCAGATCGTTATTCTGGTGGGCGCAACAGGGACTCAGGTAGTCACGGAGATTCAGGAACTGATCGGTACCCTCGTGATCGTGCTGGACCTTATGAACGACGGGCATCGGGAGGCTTTCGCTCTGGATAG 621 0.4815 MSEVDEYRCFIGGLAWSTSDRKLKDAFEKFGKLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIEAMNGMDLDGRNITVDKAQPQQGSTRDDGGDHYRERGRDRDRDYRGGRNSNGGECFKCGKPGHFARECPSEGAGGRSGGRESRYGGRSGGGGHYGPDRNADRYSGGRNRDSGSHGDSGTDRYPRDRAGPYERRASGGFRSG 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0440 206 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 78 IPR000504 GO:0003723
Lele14g0440 206 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lele14g0440 206 Pfam Zinc knuckle 119 135 IPR001878 GO:0003676|GO:0008270
Lele14g0440 206 SUPERFAMILY Retrovirus zinc finger-like domains 112 136 IPR036875 GO:0003676|GO:0008270
Lele14g0440 206 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 202 - -
Lele14g0440 206 ProSiteProfiles Zinc finger CCHC-type profile. 120 135 IPR001878 GO:0003676|GO:0008270
Lele14g0440 206 Gene3D - 116 176 - -
Lele14g0440 206 MobiDBLite consensus disorder prediction 165 197 - -
Lele14g0440 206 MobiDBLite consensus disorder prediction 75 206 - -
Lele14g0440 206 MobiDBLite consensus disorder prediction 92 113 - -
Lele14g0440 206 Gene3D - 2 115 IPR012677 -
Lele14g0440 206 SMART c2hcfinal6 119 135 IPR001878 GO:0003676|GO:0008270
Lele14g0440 206 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Lele14g0440 206 SMART rrm1_1 8 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0440 Lele-ChrLele14 16055783 16056669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0440 9 84 Eukaryotic Initiation Factors Gene Family AT4G34110 39.474 5.74e-09 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0440 14 16055783 16056669 Lele15g1956 15 12290563 12292838 hybridization
Lele14g0440 14 16055783 16056669 Lele16g1979 16 12101869 12110212 hybridization