Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0376 ATGGATGCAATGAACTATTTGAAAGCAGTGAAGAAAACATTTGACAACGAAATGGAAAAATATGATATGTTCCTTTCAATATTGGAAGATTTCAGGTACCAAAGGTGTGACGTTGCAGTCTTCTTAGGAAAGATGAAGGAAGTATTGAAAGGGCACGACTTCTTGATTCTGGGATTAAACGTCTTCTTGCCCAAAGGTTCTGAGATCCCTACTTCTTATGATCAACGTCTCAATCTGCATAATAATAGCAACGTTGACAAATCTGAGATTCTTGTACAAAAGAAGCCAAGGAAGATAAACAAGCCCCATGATAACAAAGTGAAAAATAATAATGCTCATCGCCATGACAATGGTAGAGACAATAAGAAGACTGAGATGAATAATGGAATTAATGAAGAAGAAGAAGTTGATCTCAGCAAATGTGAACGTTGTATTCAGGATTATGCTAAATCCAAGAGAAAGGTCAACAAGTATGAGAAAGCATTGTTCAAAGTTGAAGATGAAAAGTTTGAATTGGACATGTTATTGGAGCCTCTGAAATCACTCCGTAAATGTCTCGAGCAGTATCAGATCATACTTGAGAATAAGATCAATGTGAGGGAGGGTGGTTTTGACATTGAAAAACACTTTGGGCTTTCAGAGTTAAGATTGATCGAGCGTGAGCATGGTATCGGTGCTTTAGAGGAATTAAGAAATAACCCAACTGTTGCTTTGCATAAGATGTTAGAGCATATTGAAGAGAAACGTAAGAAGTTGGAACACAGACGTCAAGAACTCAACAAGAACCATTTTCTTGATGAATTAGGCCATGATGATGATGAAGAGAGCAGCGAAAGGTCATCGCCACCCAAGAACAAGTTGAATAAGTACCAGAAAGCATTGTTCGATGTTGAAGATAAGCAGTTTGAAGCGGACATGTTAGTAGAGTCTGTGAGCTCAGCATGTAAACGTTTTGAGGAAGTGAATCAGAAGATACTTGAGAAGAAGATCAATGTGAAGAAAGGTGAATTTCATATTAAACAACAGTTTAGGGATTCACATTTAAGATGGATCGAGCGTATGTACGGGGAGTATGGCCTTGAAGTTTTGAAGGCACTAGGCAATAACCCAACTGTTGCAGTTCCTACCATGTTGAAGCGTCTTCAACAGAAAAAGGAGGAGTTGGAATACGATCGTAAAGAACTCAACGAGGTTTGGGCTCAAGTTTATGCTGAAAACCACGCCAAATCTCTTCTTCATCATCTATCGTAA 1251 0.3845 MDAMNYLKAVKKTFDNEMEKYDMFLSILEDFRYQRCDVAVFLGKMKEVLKGHDFLILGLNVFLPKGSEIPTSYDQRLNLHNNSNVDKSEILVQKKPRKINKPHDNKVKNNNAHRHDNGRDNKKTEMNNGINEEEEVDLSKCERCIQDYAKSKRKVNKYEKALFKVEDEKFELDMLLEPLKSLRKCLEQYQIILENKINVREGGFDIEKHFGLSELRLIEREHGIGALEELRNNPTVALHKMLEHIEEKRKKLEHRRQELNKNHFLDELGHDDDEESSERSSPPKNKLNKYQKALFDVEDKQFEADMLVESVSSACKRFEEVNQKILEKKINVKKGEFHIKQQFRDSHLRWIERMYGEYGLEVLKALGNNPTVAVPTMLKRLQQKKEELEYDRKELNEVWAQVYAENHAKSLLHHLS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0376 416 SMART hdac_interact2seq4b 140 202 IPR013194 -
Lele14g0376 416 MobiDBLite consensus disorder prediction 96 127 - -
Lele14g0376 416 Coils Coil 242 262 - -
Lele14g0376 416 Coils Coil 378 398 - -
Lele14g0376 416 Gene3D Paired amphipathic helix 2 64 IPR036600 GO:0006355
Lele14g0376 416 Pfam Sin3 family co-repressor 148 190 IPR013194 -
Lele14g0376 416 Pfam Sin3 family co-repressor 275 328 IPR013194 -
Lele14g0376 416 MobiDBLite consensus disorder prediction 263 282 - -
Lele14g0376 416 MobiDBLite consensus disorder prediction 263 287 - -
Lele14g0376 416 FunFam Paired amphipathic helix protein Sin3 2 64 - -
Lele14g0376 416 Coils Coil 148 168 - -
Lele14g0376 416 ProSiteProfiles PAH domain profile. 1 66 IPR003822 GO:0006355
Lele14g0376 416 PANTHER SIN3B-RELATED 2 101 IPR039774 GO:0003714
Lele14g0376 416 SUPERFAMILY PAH2 domain 2 65 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0376 Lele-ChrLele14 15405173 15408399 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0376 2 69 WRKY Transcription Factor Family AT4G12020 47.059 1.10e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele14g0376 Sin3_corepress 1.1e-06 No_clan