Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0368 ATGTCTTTCCCCAGATCGAACTTGATGGGTACGAAATTTGTAATATACGATACACAGCCTCCTTGCAATAATGCCCATATAACGCCTCCAAGGAGGACAAGCCGAAGGTTTTATTCGAAAAAGGTTTCGCCAAAGGTCCCATCTGGGAGCTACAACATAGCTCAAGTAACATATGAATTAAATGTGCTCGGGACACGAGGACCGAGAAAGATGCACTGCATTATGCATTCAGTACCAACATCAGCACTTGACGCTGGTGGCGCAGTCCCTGGCCAACCCAAGCTTCTTCCTCGGCCCCTGGAGGACTCATTCCGGAGCATCTCCTTTTCAAAATCCTTAGACCGCTCTATCGAGTGCAGCAGCTCAAGATTTTCCGAGTTCATAGAAGGTGGCAAAGAGGATGAGGACGGCAAGGCAAGGCCCTTGGTTCTGAAAAACAAACCTTCAAGATGGCACGAACAATTGCAATGTTGGTGCCTTAACTTCCATGGCCGGGGAACAGTTGCATCAGTTAAAAACTTTCAGTTGATTGCTGCTGACAGCCAGTGCTCCTTTGCTGTCTCAGCCCGTGCCATCTGA 579 0.4836 MSFPRSNLMGTKFVIYDTQPPCNNAHITPPRRTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSVPTSALDAGGAVPGQPKLLPRPLEDSFRSISFSKSLDRSIECSSSRFSEFIEGGKEDEDGKARPLVLKNKPSRWHEQLQCWCLNFHGRGTVASVKNFQLIAADSQCSFAVSARAI 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0368 192 Gene3D Tubby Protein; Chain A 1 189 IPR025659 -
Lele14g0368 192 Pfam Tub family 5 179 IPR000007 -
Lele14g0368 192 PRINTS Tubby superfamily signature 50 77 IPR000007 -
Lele14g0368 192 PRINTS Tubby superfamily signature 162 178 IPR000007 -
Lele14g0368 192 PRINTS Tubby superfamily signature 144 161 IPR000007 -
Lele14g0368 192 PANTHER TUBBY-RELATED 5 180 - -
Lele14g0368 192 SUPERFAMILY Tubby C-terminal domain-like 5 182 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0368 Lele-ChrLele14 15351028 15351606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele14g0368 5 179 TUB Transcription Factor Family AT1G25280 68.817 3.19e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele14g0368 Tub 1e-51 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0368 14 15351028 15351606 Lele14g0368 14 15351028 15351606 ECH