LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele14g0279	ATGTCTATAATCGAGACCCCGACCGTCGATTGCGTTCATCAACGCGGTGGAGGTGGCGCCGATCACCACTATGTTTCAACGAAACGTAAATTTGATGATTTTAGGGCTTCTTTCGACGACGAGGGGGGAAATTTTGTTGATTGTTGTGATGTAGGTGAGATGGTAACGGTAAGAATGAGGAAAGACGAACCTAAAACCGAAAGTTCTTGCAATTCTGAAACTTTTAATGGGTCTCTCTCAGATGTTATTACATCCTCGTTTGCTTGTTCGTCCCGGGCCGAATCGAGTCGGCCATGGTCGAAGTTGCAATTTTTCATTCGATTGATGTCAGAATCAAAAAGTATAGTACTGAAAGCTTGTCCACAAGATACAGTAAAATCGATTCATGAACGTATCCAAGCAATTACGGGCATTCCGTTGTTTGAACAGAGACTGATATATATGGGTAAACAGCTACAGTGGGAACAGACTCTGGTCGATTGTGCAATTAAGAGCGATTGTCACCTTCATTTGGTTGGGCGCATGCGCAGCACAGAGCATCCTCAAGCTTGGCAGGTAATCAACGATATGGTTTCCCTAATTTGGCGTCTCTGCAGGGGTGAAGTGGAACATGATGCCTTGAAAATTATCAAAAGCCTCATGACTGAATATTTAAAAATGACGTCTAGAATTGATAATGATTCAGCTTCCGGGTATTTCCAGATATTTTTGTCTTCATCTGCCCCTGTTGTGCTAGTTATGCTCTATATGTCACCCTATGTAGGTAACAAAGAATGTGCTGATTGTTCAATTAGGCATTTTATGAGTTCCTGTCGCAGTACCTTATCTAAATCATTACATACTAAGTGTGCGCTTATAGTGTTGGAGTTTTGCAAATTACTTAGACGGGCAGGTCCTGAGGATCCTTTGTATCTGTCTTGTCGGAGCACCTTTGGGTCTTTATTGGAGACTGCTAGCATTTCCTATGTTTCTGAGAGTGACAAGGAATTGATTTCAATTAATGATATTCTCCCTTTTGTGCGGGAGATTGCAAATAGACTGTTGAGGGCTTTGGATATGAGTATGGAATCCCCCACTAGTGTAGGGCCATCGTCGAGTGATGTTCGGGATTTTACTGCATTCATACTCCCTCTAAGGACTAGAATCAACAAGCAACAAGCTTTCAGGAGCTTATATTCTTCCAAGTCTGATGAAAAGCTAAATAAGCTCCTTTTACCATTGGAAGAGGATGATATTCGTCTTATATTTAATGAATTATTGCAAAAAATGGATCAGTGCCTTAATAAAATGCAGGAAATTTTGGCTGACAAGAGACGAGATGAGGGAGATAATCTTTATTCGGCATGGTCTCAGTATCTTTCCATCTTGAAGGAATTGTATCACCTTTCTAAGCTCTATGAAGGAGCTGAAGTACAATTTTGGTTGGTGTTGAGACGTCAGAGAAGTATGCTGGTTCTACTTATCACCCATTATGCAAAGAGAACTGATGATCATCAGTGGATTCTGGAGCACAAGTGGGTAACAGATTTTGAATCTAGAAGGCATTTGGTGATGATGATGTTCCCGGATGTAAAAGAAGACTATGAGGAATTGCATGAGATGCTCATTGACCGGTCTCAGCTGTTGGCAGAATCATTCGAATACATGGCACGGGCAGAGCCTGAATCTCTACGTGCTGGTCTGTTTATGGAATTCAAAAATGAGGAAGCTACAGGTCCAGGTGTACTGCGAGAGTGGTTTTTCTTGGTATGCCAGGCTTTGTTTAATCCACAAAATGCTCTTTTTGTGGCATGCCCAAATGACCAGAGGAGATTTCTCCCCAATCCTGTTGGTGATTTCCAAGAGTGTTGA	1851	0.4182	MSIIETPTVDCVHQRGGGGADHHYVSTKRKFDDFRASFDDEGGNFVDCCDVGEMVTVRMRKDEPKTESSCNSETFNGSLSDVITSSFACSSRAESSRPWSKLQFFIRLMSESKSIVLKACPQDTVKSIHERIQAITGIPLFEQRLIYMGKQLQWEQTLVDCAIKSDCHLHLVGRMRSTEHPQAWQVINDMVSLIWRLCRGEVEHDALKIIKSLMTEYLKMTSRIDNDSASGYFQIFLSSSAPVVLVMLYMSPYVGNKECADCSIRHFMSSCRSTLSKSLHTKCALIVLEFCKLLRRAGPEDPLYLSCRSTFGSLLETASISYVSESDKELISINDILPFVREIANRLLRALDMSMESPTSVGPSSSDVRDFTAFILPLRTRINKQQAFRSLYSSKSDEKLNKLLLPLEEDDIRLIFNELLQKMDQCLNKMQEILADKRRDEGDNLYSAWSQYLSILKELYHLSKLYEGAEVQFWLVLRRQRSMLVLLITHYAKRTDDHQWILEHKWVTDFESRRHLVMMMFPDVKEDYEELHEMLIDRSQLLAESFEYMARAEPESLRAGLFMEFKNEEATGPGVLREWFFLVCQALFNPQNALFVACPNDQRRFLPNPVGDFQEC	616

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele14g0279	616	PANTHER	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	103	613	-	-
	Lele14g0279	616	ProSiteProfiles	HECT domain profile.	553	616	IPR000569	GO:0004842
	Lele14g0279	616	Gene3D	Hect, E3 ligase catalytic domains	490	615	-	-
	Lele14g0279	616	Coils	Coil	416	436	-	-
	Lele14g0279	616	SUPERFAMILY	Ubiquitin-like	103	190	IPR029071	-
	Lele14g0279	616	SMART	ubq_7	104	174	IPR000626	GO:0005515
	Lele14g0279	616	PRINTS	Ubiquitin signature	155	176	IPR019956	-
	Lele14g0279	616	PRINTS	Ubiquitin signature	113	133	IPR019956	-
	Lele14g0279	616	PRINTS	Ubiquitin signature	134	154	IPR019956	-
	Lele14g0279	616	Pfam	Ubiquitin family	105	176	IPR000626	GO:0005515
	Lele14g0279	616	Gene3D	-	96	190	-	-
	Lele14g0279	616	SUPERFAMILY	Hect, E3 ligase catalytic domain	528	610	IPR035983	GO:0004842
	Lele14g0279	616	ProSiteProfiles	Ubiquitin domain profile.	102	178	IPR000626	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele14g0279	Lele-ChrLele14	14120293	14122254	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele14g0279	102	176	Cytoplasmic Ribosomal Protein Gene Family	AT3G62250	40.000	8.90e-11	58.9