Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g0248 ATGGAGGATGCTGAAGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACACTGCTCCCGCCAACCCAGCTGCGCCGTCCGGACCTCTGGCCCCATCTGATTCTCCCGCCGTTGCTACTGCAGCAGCTAATGGTGTTACACCTAGCGCTGCCGACCCTGCTGCGAGCAATATTCCTGGCCGTCGGAGCTTCCGGCAGACGGTTTGCCGGCACTGGCTTCGTGGACTCTGCATGAAGGGCGATGCCTGCGGCTTTTTACACCAATATGACAAAGCGCGGATGCCTGTTTGCCGGTTTTTTAGATTATATGGGGAGTGTCGGGAGCAGGACTGCGTGTATAAGCACACAAACGAAGATATCAAGGAGTGTAACATGTACAAGTTGGGATTTTGTCCGAACGGTCCTGATTGCCGGTATAGGCATGCAAAAATGCCTGGACCTCCCCCTCCTGTTGAAGAAATGCTTCAAAAGATTCAGCATTTATATTCTTATAATTATGCCAACTCCAACAAATTTTACCAGCAAAGAGGTTCTGGCTATTCTCAGCAAGCTGAGAAATCTCAGTTTCCACAAGGTCCTAATTCTGCCAACCAAGCTGTGCCTGGAAAGCCATTACCAGCAGAGTCAGGCAATGTCCAGCAGCAGCAGCAACAGCAACAGCCAACACAACAGTCTCAGCAGCAGGGTAGCCAGAGTCAAATACAAAATACTACTAATGGTCAACCCAATCAGACAAACATAGCAGCAACACCCTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGCTATCTGTTCAACAAGGAGTGTGGGCAACTCAAAGGAGCAATGAGGTTAAACTCAATGAAGCCTTTGACTCGGTGGAAAATGTGATATTGATTTTTTCAGTCAACAGAACTCGACATTTTCAGGGATGTGCTAAGATGACATCCAGAATTGGGGGCTCTGCTACTGGGGGAAACTGGAAATATGCACATGGAACCGCACATTATGGACGTAACTTCTCAGTTAAATGGCTAAAGTTATGTGAATTGTCATTTCACAAGACTCGCCATTTAAGGAATCCATACAATGAGAACCTACCAGTAAAGATAAGTAGAGATTGTCAAGAACTGGAGCCTTCTATTGGTGAGCAGTTGGCATCCTTGCTATATCTGGAGCCAGATAGTGAACTTATGGCTGTCTCACTTGCAGCAGAATCTAAGAGAGAGGAAGAGAAAGCTAAGGGAGTGAATCCAGATAATGGGGGAGATAATCCAGATATTGTTCCATTTGAGGACAATGAAGAGGAGGAAGAGGAGGAAAGCGATGAAGAGGAGGAGAGCTTTGGTCCAGGTGTTGGGCCAGCTGCTCAAGGCAGAGGCAGGGGCAGAGGTATGATGTGGCCTCCTCACATGCCTATGGGACGTGGAGCCCGGCCTATTCCAGGAATGCAGGGTTTCCCCCCAGTAATGATGGGAGATGGATTATCCTATGGACCAGTTACACCTGATGGATTTGGTATGCCAGATCTATTTGGTATGGGCCCTCGTGGTTTCGGTCCCTATGGTCCTAGGTTCTCCAATGATTTTGCAGGGCCCCCGGCAGCAATGATGTTCCGTGGGCGACCCTCACAACCCGGGATGTTTCCAGGTGGTGGGTTTGGTATGATGATGAATCCAGCACGTGCTCCCTTTATGGGCGGAATGGGGGCTGCAGGTGGAAATCCACCACGGGCCGGTAGACCAGGTGGTATGCTTCCATTGTTCATGCCACAACCGCAACATCACAACCCTAATCGTGTTGCTAGGAGAGATCAAAGAACCAATGATCGGAATGATAGGTTTGGTTCTGGGATAGATCAGGGCAAGGGTCCGGATACGATGGGTCAATCAGGTGGACTTGATGATGACATGCAATATCAGCAAGGATTCAACACAGGTCAGGAGGATCAGTATGCTGTTGGAAACAACCTTAGAAATGAAGATAGTGAAAGTGAGGATGAGGCACCTCGAAGATCTAGACATGGTGAGGGGAAAAAGCGAAAAGGCGAGGTCTAG 2064 0.4859 MEDAEGVLSFDFEGGLDTAPANPAAPSGPLAPSDSPAVATAAANGVTPSAADPAASNIPGRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKMPGPPPPVEEMLQKIQHLYSYNYANSNKFYQQRGSGYSQQAEKSQFPQGPNSANQAVPGKPLPAESGNVQQQQQQQQPTQQSQQQGSQSQIQNTTNGQPNQTNIAATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEVKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSATGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAVSLAAESKREEEKAKGVNPDNGGDNPDIVPFEDNEEEEEEESDEEEESFGPGVGPAAQGRGRGRGMMWPPHMPMGRGARPIPGMQGFPPVMMGDGLSYGPVTPDGFGMPDLFGMGPRGFGPYGPRFSNDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPARAPFMGGMGAAGGNPPRAGRPGGMLPLFMPQPQHHNPNRVARRDQRTNDRNDRFGSGIDQGKGPDTMGQSGGLDDDMQYQQGFNTGQEDQYAVGNNLRNEDSESEDEAPRRSRHGEGKKRKGEV 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g0248 687 MobiDBLite consensus disorder prediction 406 469 - -
Lele14g0248 687 MobiDBLite consensus disorder prediction 662 687 - -
Lele14g0248 687 ProSiteProfiles Zinc finger C3H1-type profile. 63 90 IPR000571 GO:0046872
Lele14g0248 687 SMART c3hfinal6 119 143 IPR000571 GO:0046872
Lele14g0248 687 SMART c3hfinal6 63 89 IPR000571 GO:0046872
Lele14g0248 687 SMART c3hfinal6 91 117 IPR000571 GO:0046872
Lele14g0248 687 MobiDBLite consensus disorder prediction 406 420 - -
Lele14g0248 687 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 28 679 IPR045168 -
Lele14g0248 687 MobiDBLite consensus disorder prediction 636 661 - -
Lele14g0248 687 MobiDBLite consensus disorder prediction 431 450 - -
Lele14g0248 687 Gene3D ph1033 like domains 235 395 - -
Lele14g0248 687 SUPERFAMILY CCCH zinc finger 65 88 IPR036855 GO:0046872
Lele14g0248 687 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 59 119 - -
Lele14g0248 687 Pfam YT521-B-like domain 257 391 IPR007275 GO:0003723
Lele14g0248 687 MobiDBLite consensus disorder prediction 176 198 - -
Lele14g0248 687 ProSiteProfiles YTH domain profile. 257 392 IPR007275 GO:0003723
Lele14g0248 687 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Lele14g0248 687 MobiDBLite consensus disorder prediction 12 37 - -
Lele14g0248 687 MobiDBLite consensus disorder prediction 208 250 - -
Lele14g0248 687 MobiDBLite consensus disorder prediction 572 687 - -
Lele14g0248 687 MobiDBLite consensus disorder prediction 176 250 - -
Lele14g0248 687 Gene3D - 59 121 - -
Lele14g0248 687 MobiDBLite consensus disorder prediction 600 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g0248 Lele-ChrLele14 13506797 13517353 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele14g0248 YTH 2.8e-45 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g0248 14 13506797 13517353 Lele14g0248 14 13506797 13517353 ECH
Lele14g0248 14 13506797 13517353 Lele15g2188 15 15837319 15838841 hybridization
Lele14g0248 14 13506797 13517353 Lele16g2158 16 16823338 16841337 hybridization