LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele14g0027	ATGCATAACAAGAAAGAACTTTGTAGAAATTTTCAGCGAGGCAGCTGCCAATATGGAGAAAGGTGTAAATTTCTTCACATGCTGCCACAGCAGCAAAAGCAAACTACCAATCCTTTTGGATTTGGTTCCCACTCCAGTTCGCACCAAAAACAAACTACCAATCCTTTTGGATTTGGGTCTCAGTCCAGTTCACAGCAACAGCATAAGACCAATCCTTTTGGATTTGGTGTGCAGAACAGTTCCCAGTCAACGGGGGGCACTAATTCAGAGTTCAAACAACAGTTCAAGCCTTTTGAAAACAAATGGACTCGACCTTCTTCCTCACCCCAGAATAATGCTCCACGTAAAACTGATGCCAATTCTCAACCAGGGAATCATAAGTGCACAGATCCTGAAACTTGCAAACGTCAGATTGTAGAAGATTTTGAGCAAGAGAAACCCCTTTGGAAGCTTACATGCTATGGTCATAATAAAGGTGGTCCTTGTGACGTTGTTGGGGATATTAGCTATGAAGAATTGCGGGCAGCTGCATATGAGGATGCTTGTCGTGGGATGGCCTTTCCGTCAATTGTTGAGAGAGAGAGAAATCTACTAAGTTCCAAGTTAGCGGAGTTTCAGAACCTTCTTCATGAACCTTACAAAATACCGCAGAGTTCTTCTCTTACAAGTGATAAGAATCAATCTCTTGGAATTGATGCAAACCCATTTTCAAGGACTTCACAAAATAATAATCCTTTGTCTGTCTCTAGTTTTAGTCAACTGGGGACTTCAATGAACATGGGTATTGAAAGGCCTTCTGCATCCCCAGTAGATCCTCAGGCTCAACCTAGCTTCTTTGGAACTAGAGGAAATCCGTTGGCAGCCAATGTGACAAATCAAACTGGTGGAGCCATTGCAGGTGGCCAAATTAACCACTTTCCGACATCACCAGAAGTTGCAAAGTTCCCCAGCGTGACTACACAGCAATCGTTTGTTGCGAACAATGGCTCTAGTTCTGCTATGATGTTTTCAGCAAGCACAGGTGTTCAGTTGTCAAGCAAGTCCAAAGATGAGAATTTCTCTGGAGATACCAGTATTTGGTTAAAAGAGAAATGGATTCCTGGAGAGATTCCAGAAGAAGCTCCTCCTGATGCATTTGTTAGGTAA	1146	0.4284	MHNKKELCRNFQRGSCQYGERCKFLHMLPQQQKQTTNPFGFGSHSSSHQKQTTNPFGFGSQSSSQQQHKTNPFGFGVQNSSQSTGGTNSEFKQQFKPFENKWTRPSSSPQNNAPRKTDANSQPGNHKCTDPETCKRQIVEDFEQEKPLWKLTCYGHNKGGPCDVVGDISYEELRAAAYEDACRGMAFPSIVERERNLLSSKLAEFQNLLHEPYKIPQSSSLTSDKNQSLGIDANPFSRTSQNNNPLSVSSFSQLGTSMNMGIERPSASPVDPQAQPSFFGTRGNPLAANVTNQTGGAIAGGQINHFPTSPEVAKFPSVTTQQSFVANNGSSSAMMFSASTGVQLSSKSKDENFSGDTSIWLKEKWIPGEIPEEAPPDAFVR	381

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele14g0027	381	MobiDBLite	consensus disorder prediction	218	245	-	-
	Lele14g0027	381	MobiDBLite	consensus disorder prediction	34	128	-	-
	Lele14g0027	381	ProSiteProfiles	Zinc finger C3H1-type profile.	3	29	IPR000571	GO:0046872
	Lele14g0027	381	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	4	27	IPR000571	GO:0046872
	Lele14g0027	381	SMART	c3hfinal6	2	28	IPR000571	GO:0046872
	Lele14g0027	381	Gene3D	-	1	76	-	-
	Lele14g0027	381	SUPERFAMILY	CCCH zinc finger	3	30	IPR036855	GO:0046872
	Lele14g0027	381	MobiDBLite	consensus disorder prediction	34	131	-	-
	Lele14g0027	381	PANTHER	NUCLEOPORIN-LIKE PROTEIN 2	96	246	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele14g0027	Lele-ChrLele14	511056	517940	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Lele14g0027		zf-CCCH	1e-09	CL0537