Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2389 ATGAATTGCTTCCCCTGTTTCTCCTCTTGCAAAAGTAAGAAAAGCCATAACAAGATGGAGCATGGTTCCCCACCGCACGAAAACATTCCGTCTACACCGCCCGATGTGAAGAAACAACAGCAAGAAAATCCAGGCCAAGTTGATCCGGCAAGTATAAAAGCGCAAACTTTCACTTTCCGGGAGCTAGCAACCGCCACAAAGAATTTTCGTCGTGAATGCCTACTGGGTGAAGGCAGCTTTGGCAGAGTGTATAAGGGCACGCTTCCCGCAACCGGCCAGGTGGTGGCCGTGAAGCAACTCGACAGAAATGGGGTGCAGGGTAACAATAAGGAGTTTCTGGTGGAGGTTTTGATGCTAAGTCTCTTGCATCACGAAAATCTAGTGAATCTCATCGGTTATTGTGCCGACGGGGAGCAACGCCTTTTGGTTTACGAATTTGTGAAAGGGAGTTCCCTGGAAGAACATCTTCTCGAGGATGGAGCAAATAAGCGCCCATTGAATTGGATGAGTAGGATCAAGATAGCGTATAATGCGGCGAGAGGACTGGAGTACTTGCACGACAAGGCCAACCCCCCGGTCATATATCGGGACTTGAAATCCTCAAATATACTGCTGGACGATGGTTTTAATCCCAAACTCTCTGATTTCGGGCTGTTCAAGCTCGCCGGCGTACATAAGGCCGGCCCCGCACCTTCTATAGTCATGGGTACCAACGGATACTCCGCTCCGGAATGTTCAACAACAGGTAATGTCACCTTCAAGTCGGATGTCTACAGTTTTGGAGTTATCTTGCTGGAGCTCATTACGGGACGGAGGGCCGTCGACACCACGAGGCCAAACCATGAACAAAACATAGTCTCGTGGGCTCAACCGTTTTTCAAAGACCCAAAAAGATTCCCGGATATGGCGGATCCGGATCTGGGGAGACGTTTTCCAGAGAAGGACCTGAACCAAGCTGTGGCAATAGCGGCCATGTGCCTGCAGGAGGAAGCGGGAGCGCGCCCTTTGATGAGCGACGTGGTAACTGCTCTCAGTTTCCTAACAATGGGAAGGGGGGAAGGAAAAAAGAGAAAGGGAGATGGAGATGGAGATGGAGATGGAGAGATCAGACGACGTCGTGGAGCTGAGGCTGCTCTGGTTTATGATCACAGTCGCATGGCTGCATCTGCGTGCATTTGGATTGGGCGTCCTTTGTGCGTGCACGAATTAAAGAGGACAAGCTGGACGAGACGAGTTATAAATGCAAGTGATGATTGCGTGCGTGCACGCCACAATTTCATGCAAAGAACTGAAGTTATATTATCAACATATCTGCAGGGTGCTGGGTTAGTGGCATAG 1338 0.5 MNCFPCFSSCKSKKSHNKMEHGSPPHENIPSTPPDVKKQQQENPGQVDPASIKAQTFTFRELATATKNFRRECLLGEGSFGRVYKGTLPATGQVVAVKQLDRNGVQGNNKEFLVEVLMLSLLHHENLVNLIGYCADGEQRLLVYEFVKGSSLEEHLLEDGANKRPLNWMSRIKIAYNAARGLEYLHDKANPPVIYRDLKSSNILLDDGFNPKLSDFGLFKLAGVHKAGPAPSIVMGTNGYSAPECSTTGNVTFKSDVYSFGVILLELITGRRAVDTTRPNHEQNIVSWAQPFFKDPKRFPDMADPDLGRRFPEKDLNQAVAIAAMCLQEEAGARPLMSDVVTALSFLTMGRGEGKKRKGDGDGDGDGEIRRRRGAEAALVYDHSRMAASACIWIGRPLCVHELKRTSWTRRVINASDDCVRARHNFMQRTEVILSTYLQGAGLVA 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2389 445 ProSiteProfiles Protein kinase domain profile. 69 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g2389 445 Gene3D Transferase(Phosphotransferase) domain 1 148 359 - -
Lele13g2389 445 MobiDBLite consensus disorder prediction 11 50 - -
Lele13g2389 445 FunFam Serine/threonine-protein kinase PBS1 147 360 - -
Lele13g2389 445 PANTHER OS07G0668900 PROTEIN 3 351 - -
Lele13g2389 445 MobiDBLite consensus disorder prediction 33 50 - -
Lele13g2389 445 SMART serkin_6 69 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g2389 445 SUPERFAMILY Protein kinase-like (PK-like) 48 347 IPR011009 -
Lele13g2389 445 FunFam probable serine/threonine-protein kinase RLCKVII 39 146 - -
Lele13g2389 445 Gene3D Phosphorylase Kinase; domain 1 37 146 - -
Lele13g2389 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Lele13g2389 445 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Lele13g2389 445 CDD STKc_IRAK 75 344 - -
Lele13g2389 445 Pfam Protein kinase domain 72 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2389 Lele-ChrLele13 29502308 29505801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2389 1 347 Glycoside Hydrolase AT3G07070 64.426 4.40e-157 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lele13g2389 Pkinase 5.1e-45 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2389 13 29502308 29505801 Lele15g0026 15 153719 155257 hybridization