Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2383 ATGTTGAAGCTGTCTCGCATGCTCGCTTCCAGGCATCAGGTATCAGAAACATTGCTATCTCAGAAAGCTGATCTTATAGCCAGTCTATGGCTTCTGTGTGGTTCTACTACCCATTCAGCTGGCATTTCTACTGCTACCAATAATTATTCTGCTAAAGGATATAATTCAAGTCAAATATTTGTTCCATATTCTGTTTTCAAAGGAAAAGCTGCACTCTCTCTGAGCCCCCGACTTCCAACTTTCACCAAGTTGGATTCTGGGACCATTGTAATTGGTCGTCGTGGTTCAATGATGATGACTTTTGTATCTGCTCTTGGTGAGCGCAAATATGACTGGGAGAAGAAACAGAGATTTGCTCTCTCAGCTACGGAGGTTGGTTCTTTGATAAGCATAGGCCCCACAGATTCCTGTGAATTCTTTCATGACCCTGGAATGTTATCAAGTAATGCTGGTCAAATCAGGAAAAGCTTATCAATTAAGCCACATGCAGACAGCTCTGGCTACTTTATGTCTTTGTCTGTTGTCAACAACATTTTAAAAACCAAAGAATACTTGTCCGTTCCAGTCACAACTGCTGAGTTTGCTGTGATGAAGACTGCTTGCAGTTTTGCATTGCCGCACATTATGGGTTGGGATCGTCTGACTCATGATCAGTCCAGAGAAATGCATGGTCATCAATCAAAGGTGGAGCCGCAAGTTCTAGACTTGGAGTGGGCAAAGTGA 723 0.4288 MLKLSRMLASRHQVSETLLSQKADLIASLWLLCGSTTHSAGISTATNNYSAKGYNSSQIFVPYSVFKGKAALSLSPRLPTFTKLDSGTIVIGRRGSMMMTFVSALGERKYDWEKKQRFALSATEVGSLISIGPTDSCEFFHDPGMLSSNAGQIRKSLSIKPHADSSGYFMSLSVVNNILKTKEYLSVPVTTAEFAVMKTACSFALPHIMGWDRLTHDQSREMHGHQSKVEPQVLDLEWAK 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2383 240 SUPERFAMILY ssDNA-binding transcriptional regulator domain 57 227 IPR009044 GO:0003677|GO:0006355
Lele13g2383 240 Gene3D Transcriptional Coactivator Pc4; Chain A 49 226 IPR009044 GO:0003677|GO:0006355
Lele13g2383 240 Pfam Whirly transcription factor 65 199 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lele13g2383 240 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 29 240 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2383 Lele-ChrLele13 29445477 29448161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2383 56 240 Whirly Transcription Factor Family AT1G71260 68.783 5.88e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Lele13g2383 Whirly 2.3e-55 CL0609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2383 13 29445477 29448161 Lele15g0037 15 221080 223949 hybridization
Lele13g2383 13 29445477 29448161 Lele16g0037 16 237721 242791 hybridization