Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2382 ATGGAAAAAGCATCAGCCTTTCTTTTGTTGGCTTCTTACATCGTCGTCTCCGTTTCTGCTATCGATAGTGACTATGCGCAGTGCAATTGTGACGAAGAAGGGCTTTGGAGCATACATAACATTCTAGAGAGCCAAAGAGTTAGTGATTTCTTTATTGCCATAGCATACTTTTCGATCCCCGTAGAACTCCTCTACTTCGTTAGTCGCTCCAACCTTCCCTTCAAGTGGGTGTTCCTTCAATTCATTGCATTCATAGTTCTTTGTGGCTTGACGCATTTACTTAATGCATATACTTATTACGGACCTCATTCCTTCCAGTTGCTGCTCTCCCTTACAATTGCTAAACTCCTCACAGCCCTGGTCTCTTGTGCAACTGCAATTACCCTTTTTACTCTGATTCCTCTTCTTCTCAAAATCAAAGTGAGGGAGCTCTTTTTGAAGCAGAACGTGTTGGAATTGGACCAGGAGATTGGAATGATCAAAAGACAAAAAGAAGCAAGCTGGCATGTTCGGATGCTAACACGGGAAATTAGGAAGTCTCTGGATAAGCATACAATCTTGTACGCTACCCTTGTTGAGCTTTCTAAATCATTGGACTTGCTAAACTGCGCTGTTTGGATGCCAAATGAGGATGGGCGGGAAATGTACTTAACCCATGAGTTGAAAACAAGCTCCCCCGATATTTTTCGCTATTCTATTCCCATAAACGACCCAGATGTCTTAGAGATAAGAAAAAGTAAAGGGGTTAGGATTTTGAGACCTGAATCAGCACTAGGAGCTGCAAGTAAGGGGGGATCTGGGGAGTCAGGTGCTGTTGTAGCTATTCGTATGCCGATGCTTCATGTCTCAAATTTTAAAGGAGGAACACCTGAGTTAGTTGATACATCCTATGCTATTCTGGTTTTGGTTCTTCCAAATTCAAACTCCAGGGCTTGGAGCCACCAAGAGATGGAGATAGTGGAGGTAGTTGCTGATCAGGTCGCTGTAGCCCTGTCTCATGCGTCTGTTCTTGAAGAGTCTCAGCTCATGAGACAGAAACTGGCAGAGCAAAACCGAGCTTTGCAACAGGCTAAAAAGAATGCAATGATGGCTAGTCAGGCAAGGAAATCATTTCAGAAAGTGATGAGTCATGGTATGCGCAGGCCTATGCATTCAATCCTGGGCTTGCTTTCAATGTTTCAAGAGGACAATTTGAGATCTGAGCAAAAGGTTATAGTTGACACAATGATCAAAGTTGGCCATGTTCTCTCTAGTTTGATTAATGATGTAATGGAGATTTCCGTAGATGATAAAGGAAGCTTCCAGTTGGAGATGAAACCTTTCAATTTACATTTGATGATGAGAGAAGCTGCTTGTATTGCTAAGTGTTTGTGTGTATATAAAGGCTTTGGTTTTAAAATTGAAGTCCAGAAGTCATTGCCCGATTTGGTGATAGGGGATCAGGCAAGGGCCTTTCAAGTAATTTTGCATATGACTGACTATTTATTGAACATATATGATGGAGAACGGACTTTCATTTTTCAAGTTTATCTTGAAAATGATAATGGGGATAAGGACGATAATTTTTTGGGAATATGGAGATCAGGCATGCAAAATGATAATGTATATATAAAATTTGATTTTCGGATAACTGGTACAAGTTCACGGTCAGATGAATTAACTTCAACAAGACACTATGCTGGTGGAAGGCATTACGGCACTGAACCTAATGAGGGCCTAAGCTTCAGAATGTGTAAAACGCTGGCACAGATGATGCAAGGCAATATCTGGTTATCACCAAACGCTCTAGGTTTGGCAGAGAGCTTGACACTTGCTCTCAAGTTTGAGATAGGGGGGCCATCTCACCGAAGATCCATTTTAGCACCTAAAGATTCTCTGGACTGTCGGTTCAGAGGCCTCAAGGTTGTGTTAACGGACGATGATGATATAAACAGGACAGTGACGAAGAAACTTCTTGAGAAGTTGGGTTGTCAAGTAACTGCTGTTTCATCAGGGTTCGAATGCCTGGGCGCAATAAGTGCATCCGGTAACACATTCAAGGTCATCCTTATGGATCTGCACATGCCTGAGATGGATGGTTTTGATGTGGCGATGAGGATACGGAAGTTCCGCAGCCGCAACTGGCCCTTGATTATAGCTCTTACGGCGAGTGCAGAAGAAGATGTGATGGATAGATGCCTACGGGTTGGGATGAATGGATTAATTCGAAAACCTATTCTTCTGCAAGAGATAGCAGATGAACTTAGAAGAGTCCTGCAACGCGCAGGCGAAAATTTGTGA 2280 0.4263 MEKASAFLLLASYIVVSVSAIDSDYAQCNCDEEGLWSIHNILESQRVSDFFIAIAYFSIPVELLYFVSRSNLPFKWVFLQFIAFIVLCGLTHLLNAYTYYGPHSFQLLLSLTIAKLLTALVSCATAITLFTLIPLLLKIKVRELFLKQNVLELDQEIGMIKRQKEASWHVRMLTREIRKSLDKHTILYATLVELSKSLDLLNCAVWMPNEDGREMYLTHELKTSSPDIFRYSIPINDPDVLEIRKSKGVRILRPESALGAASKGGSGESGAVVAIRMPMLHVSNFKGGTPELVDTSYAILVLVLPNSNSRAWSHQEMEIVEVVADQVAVALSHASVLEESQLMRQKLAEQNRALQQAKKNAMMASQARKSFQKVMSHGMRRPMHSILGLLSMFQEDNLRSEQKVIVDTMIKVGHVLSSLINDVMEISVDDKGSFQLEMKPFNLHLMMREAACIAKCLCVYKGFGFKIEVQKSLPDLVIGDQARAFQVILHMTDYLLNIYDGERTFIFQVYLENDNGDKDDNFLGIWRSGMQNDNVYIKFDFRITGTSSRSDELTSTRHYAGGRHYGTEPNEGLSFRMCKTLAQMMQGNIWLSPNALGLAESLTLALKFEIGGPSHRRSILAPKDSLDCRFRGLKVVLTDDDDINRTVTKKLLEKLGCQVTAVSSGFECLGAISASGNTFKVILMDLHMPEMDGFDVAMRIRKFRSRNWPLIIALTASAEEDVMDRCLRVGMNGLIRKPILLQEIADELRRVLQRAGENL 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2382 759 Coils Coil 757 759 - -
Lele13g2382 759 Gene3D - 431 610 IPR036890 -
Lele13g2382 759 Coils Coil 337 367 - -
Lele13g2382 759 CDD REC_ETR-like 633 748 - -
Lele13g2382 759 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 352 430 IPR036097 GO:0000155|GO:0007165
Lele13g2382 759 CDD HATPase_ETR2_ERS2-EIN4-like 473 606 - -
Lele13g2382 759 Gene3D - 160 332 IPR029016 -
Lele13g2382 759 FunFam Ethylene receptor 631 755 - -
Lele13g2382 759 SUPERFAMILY GAF domain-like 185 334 - -
Lele13g2382 759 Pfam GAF domain 184 331 IPR003018 GO:0005515
Lele13g2382 759 SMART REC_2 633 748 IPR001789 GO:0000160
Lele13g2382 759 SUPERFAMILY CheY-like 629 754 IPR011006 -
Lele13g2382 759 Pfam Response regulator receiver domain 635 747 IPR001789 GO:0000160
Lele13g2382 759 Gene3D - 633 758 - -
Lele13g2382 759 SMART gaf_1 182 341 IPR003018 GO:0005515
Lele13g2382 759 FunFam Ethylene receptor 4 334 428 - -
Lele13g2382 759 ProSiteProfiles Response regulatory domain profile. 634 752 IPR001789 GO:0000160
Lele13g2382 759 PIRSF Ethylen_sen_hybr_HK 1 759 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Lele13g2382 759 CDD HisKA 365 427 IPR003661 GO:0000155|GO:0007165
Lele13g2382 759 SMART HisKA_10 367 432 IPR003661 GO:0000155|GO:0007165
Lele13g2382 759 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 24 755 - -
Lele13g2382 759 Pfam His Kinase A (phospho-acceptor) domain 369 430 IPR003661 GO:0000155|GO:0007165
Lele13g2382 759 Gene3D - 333 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2382 Lele-ChrLele13 29439965 29443886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2382 22 757 Miscellaneous Gene Families AT3G04580 62.299 0.0 918
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele13g2382 GAF 9e-09 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2382 13 29439965 29443886 Lele15g0038 15 226273 230217 hybridization
Lele13g2382 13 29439965 29443886 Lele16g0038 16 243440 247406 hybridization