Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2379 ATGGATCAATCAGTTCTTGATGACATCATCAATCGTCTGCTTGAAGTTCGTGGTCGACCGGGTAAGCAGGTTCAGTTATCGGAGTCAGAGATCCGCCATCTATGTGTAGCGTCTAAAGAAATTTTCTTGCAGCAGCCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGTGGTGATGTGCATGGTCAATATTCTGATCTTTTGAGACTTTTCGAGTATGGTGGATTACCCCCTCATGCCAATTATTTGTTTTTGGGGGATTATGTGGATAGGGGGAAACAGAGTTTGGAAACAATATGCCTTCTCCTGGCTTATAAAATAAAATATCCTGAGAACTTTTTCCTTTTGAGAGGGAACCATGAATGTGCTTCTATAAATCGAATATATGGATTTTATGATGAGTGTAAGAGAAGATTCAATGTAAGGTTGTGGAAGACATTTACAGATTGCTTCAACTGCCTGCCAGTAGCAGCCCTTATTGATGAAAAGATTCTGTGTATGCATGGGGGACTTTCACCTGATTTGCATAATTTGGATCAAATAAGAAATCTACAGCGACCCACTGATGTGCCAGATACAGGTTTGCTTTGTGATCTACTTTGGTCGGACCCAAGCAAAGATGTCCAAGGCTGGGGAATGAATGACAGGGGAGTTTCATATACGTTTGGTGCTGATAAGGTGTCAGAGTTTCTTCAGAAGCATGATCTAGACCTTATATGCCGTGCTCATCAGGTTGTAGAGGATGGATATGAGTTCTTTGCTAACCGACAGCTTGTAACAATATTTTCAGCTCCTAATTATTGCGGGGAGTTTGACAATGCCGGTGCCATGATGAGTGTGGATGAGACGTTAATGTGCTCTTTCCAAATATTAAAGCCTGCTGATAAAAAACCAAAGCTCAATTTTGGAAGTACGACAACTGCTAAGCCTGGAAACTCTCCAGCTGGTGTCAAGTCCTTCCTGGGTAAAGTTTGA 978 0.4162 MDQSVLDDIINRLLEVRGRPGKQVQLSESEIRHLCVASKEIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPHANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALIDEKILCMHGGLSPDLHNLDQIRNLQRPTDVPDTGLLCDLLWSDPSKDVQGWGMNDRGVSYTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKPKLNFGSTTTAKPGNSPAGVKSFLGKV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2379 325 SMART pp2a_7 26 296 IPR006186 GO:0016787
Lele13g2379 325 SUPERFAMILY Metallo-dependent phosphatases 17 299 IPR029052 -
Lele13g2379 325 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 299 - -
Lele13g2379 325 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Lele13g2379 325 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Lele13g2379 325 FunFam Serine/threonine-protein phosphatase 1 303 - -
Lele13g2379 325 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Lele13g2379 325 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Lele13g2379 325 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Lele13g2379 325 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Lele13g2379 325 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Lele13g2379 325 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Lele13g2379 325 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Lele13g2379 325 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Lele13g2379 325 Gene3D - 1 305 IPR029052 -
Lele13g2379 325 CDD MPP_PP1_PPKL 5 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2379 Lele-ChrLele13 29426618 29430729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2379 34 239 Calmodulin-binding Proteins AT5G63870 30.081 1.47e-27 107
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2379 13 29426618 29430729 Lele14g2309 14 27780688 27787024 ECH
Lele13g2379 13 29426618 29430729 Lele13g2379 13 29426618 29430729 ECH
Lele13g2379 13 29426618 29430729 Lele15g0041 15 239525 245291 hybridization
Lele13g2379 13 29426618 29430729 Lele16g0041 16 276687 278160 hybridization