Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2375 ATGGCGACTCCATCAGCCTCTGCCGCTTCTTCCGTGTCTTCGCAATTCGCCAACTCCAACGCTTCATATTTCCCCCTGCCCTTTCACCTTCAACAATCCCTAGCGACGCAGTATGCGACCTCATATGTGGCTGCATCGCCCGCAGTGCAAATTTCTCCTGCTCCCCTGTATCCCTCTCCCGCACCGGTCGCTGGTTTGTATCCTCTGCCACAGTATCAGCAGGCGCAGCAACTATTTCAAAGGGATGCACAGACAATTACACCTGAGGCTCTTGAGAGTGTCAAGGCGGCCATTGCAAATAGCGAGGTTGAGCATAAGGGGGTGACCAAAAAGAAAGCAGTTCCTCGCAAAGCTGCTGGCCAAACATGGCAGGATCCCACCCTGGCAGATTGGCCAGAAAATAATTATCGGCTCTTTTGTGGTGATCTTGGCAATGAGGTGAATGATGATGTTCTATCAAAAACATTTTCTCGATTTCCTTCCTTTAACATGGCCCGAGTTGTCAGAGACAAGCGGACTGGAAAAACGAAGGGTTATGGATTTGTAAGCTTTGCCAATCCCGCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATACGTTGGAAATCGACCAATTAAGCTGCGCAAGAGTAAGTGGCAGGACAGGACAGACTTTGAGGCCCTGGAAAAACAGAAGAACCAAGCACAGAAGAAATCCAAATTGCCCAAGAGGGGTATCCTGCACAAGTAA 735 0.4912 MATPSASAASSVSSQFANSNASYFPLPFHLQQSLATQYATSYVAASPAVQISPAPLYPSPAPVAGLYPLPQYQQAQQLFQRDAQTITPEALESVKAAIANSEVEHKGVTKKKAVPRKAAGQTWQDPTLADWPENNYRLFCGDLGNEVNDDVLSKTFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPADLAAALKEMNGKYVGNRPIKLRKSKWQDRTDFEALEKQKNQAQKKSKLPKRGILHK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2375 244 Gene3D - 71 211 IPR012677 -
Lele13g2375 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 208 IPR000504 GO:0003723
Lele13g2375 244 CDD RRM_RBM42 130 212 IPR034215 -
Lele13g2375 244 FunFam RNA-binding protein 42 71 221 - -
Lele13g2375 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Lele13g2375 244 MobiDBLite consensus disorder prediction 224 244 - -
Lele13g2375 244 SUPERFAMILY RNA-binding domain, RBD 120 214 IPR035979 GO:0003676
Lele13g2375 244 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 61 226 - -
Lele13g2375 244 SMART rrm1_1 137 210 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2375 Lele-ChrLele13 29400909 29403786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2375 138 238 Eukaryotic Initiation Factors Gene Family AT1G71770 28.713 5.17e-09 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2375 13 29400909 29403786 Lele15g0046 15 277323 281352 hybridization