Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2373 ATGAGGATTATGATAAAGGGTGGTGTTTGGAAAAACACCGAGGATGAAATCCTCAAAGCGGCTGTTATGAAATACGGTAAAAACCAGTGGGCTCGAATCTCTTCGCTTTTGGTTCGCAAATCTGCCAAGCAGTGTAAGGCTCGATGGTACGAGTGGCTTGATCCTTCGATTAAAAAGACTGAATGGACAAGAGAAGAGGATGAAAAACTTCTTCATCTTGCTAAGCTTATGCCCACACAATGGAGAACAATTGCTCCAATTGTAGGCCGTACCCCTTCCCAGTGCCTTGAACGGTATGAGAAGCTCCTTGATGCGGCCTGTGTAAAGGATGAGAACTATGAACCTGGTGATGACCCACGGAAATTGCGACCTGGTGAGATTGACCCAAACCCTGAGTCAAAGCCTGCACGACCAGATCCAGTTGATATGGATGAGGATGAGAAGGAAATGTTGTCTGAAGCACGAGCTAGGTTAGCCAACACCAAGGGTAAGAAGGCAAAACGGAAAGCCAGGGAGAAACAACTAGAAGAAGCCAGGAGGCTTGCCTCTTTACAAAAAAAGAGAGAATTGAAGGCTGCTGGAATTGATATCAGGCAGCGGAGGAGGAAAAGGAAAGGAATAGACTACAATGCAGAAATCCCATTTGAGAAAAGGCCTCCTCCGGGGTATTTTGATGTTACTGATGAAGATAGACCAGTGGAACAGCCCAAGTTCCCTACCACAATTGAAGAACTTGAGGGTAAAAGAAGGGTTGATGTGGAAGCACAGTTAAGAAAACAAGACATTGCAAAGAATAAGATTGCACAAAGGCAAGATGCCCCCTCTGCTATACTACATGCCAACAAGCTCAATGACCCAGAAACAGTTAGAAAAAGGTCAAAATTGATGCTTCCACCACCCCAAATTTCTGATCATGAATTAGAAGAAATTGCAAAGATGGGTTATGCTAGTGACCTTGTGGGGAGTGAGGAAATTGCTGAAGGCAGTGGTGCAACACGTGCTCTTCTGGCTAATTATGCTCAGACCCCTAGTCAGGGAATGACTCCTTTGCGAACTCCTCAGAGAACGCCTGCTGGTAAAGGAGATGCCATCATGATGGAAGCTGAAAATCTGGCAAGGTTGAGGGAGTCTCAGACACCATTGTTTGGAGGAGATAACCCTGAGTTGCATCCTTCAGACTTTTCTGGGGTCACTCCTAAGAAAAAAGAAATTCAGACTCCAAATCCGATGTTGACTCCCTCTGCGACGCCTGGAGGTGCAGGCCTCACCCCTAGAAGTGGTATGACACCAGGAAGGGATGGCTTTTCTTTTGGTATGACTCCTAAGGGAACTCCTCTTAGAGATGAGCTTCATATCAACGAAGAGATGGATTTGCATGAGAGCACAAAACTTGAGCTACGTAGACAAGCTGATCTCAAAAGAAGCTTGCACTCTGGTTTAAGCAGTCTTCCACAGCCAAAAAATGAGTACCAGATAGTTATGCAGCCAGCTCCAGAAGATGTTGAAGAACCTGAGGAAAAGATTGAAGAGGATATGTCTGACAGAATAGCTCGAGAAAAAGCTGAAGAAGAAGCTCGGCAACAAGCATTACTTAGAAAACGATCTAAGGTCCTTCAAAGGGAGCTTCCTAGGCCTCCTGCTGCATCATTGGAACTGATAAGAAATTCTTTGATTATTGCTGATGGGGATAAGAGTTCCTTTGTTCCTCCTACTTCTATTGAGCAAGCGGATGAGATGATACGAAAGGAGCTTCTAAGCTTACTGGAACATGACAATGCCAAGTACCCACTTGATGAGAAAGTGAATAAGGAGAGGAAAAAAGGAGTCAAGCGTGCTGCAAATGGATCTGCTGTTGTCCCTCTGATTGAAGATTTTGAGGAAGATGAAATGAAAGATGCTGATCAGTTGATAAAGGAGGAGGCTCAGTATCTTCGTGAAGCAATGGGACATGAAAGTGAACCCCTTGATGAATTTGTTGAAGCACATAGAACTTGCCTTAATGATCTTATGTACTTTCCTACCCGTAATGCCTATGGGCTCTCAAGTGTTGCTGGAAACATGGAGAAGCTTGCAGCTTTGCAGAATGAATTTGAGAATGTGAGACAAAAGTTGGATGATGGCAAGGAGAAGGCGGTACGCCTTGACAAGAAGGTGATGGTTCTTACGCAAGGCTATGAGATGAGGGCAAAGAAAAGTCTTTGGCCACAAATTGAAGCCACATTCAAGCAGATGGATACTGCTGCGACAGAACTAGAGTGCTTTCTAGTTTTGAAAAAGCAGGAGCAGCTAGCTGCGTCGCATAGGATAAACAATATATGGGCTGAAGTAGAGAAACAAAAGGAGCTTGAGAAAACCTTACAAAAGAGATATGGGGATCTTCTGGCAGAAGTGGAAAGGATTCAAAACACTATGAACCAATACATGGTGCATTCTAACCAGGAAGAAGTTGCTGCCAAGAAGCGTTCTCTTGAGTTAGTTGAGACATCTGATGAAACGAGCATGCAGGGTATAGAGAATCATGAAAGTATATCCCACTCAGATGAGCATGGAAGTGCTATGTTAGTTAATTCAACGCATGATGAAACTTTGGTACAGCTGCAAGCCGAGGCCACATCAGACCTAAAAAATGATACGGGTGTGGATGCTGATAAAGAGCAAATGACACGGGATGCTGATGTCAAACTACAAGATGCGACACCCGTTGCAGAGGAGGGGGTCAGTGCAACTATAGTACCAGGTAAGAGCATGGATAGTTGTATTGCCCACGGGGAGACCACTCTAGAAAAGGGGGCTCCAGAGGATACAAGTATTGAGAGACATGGGGAGGATCAAGATTTGAAGAATCCAGATAATGAGGCCATAGACTCACATCATGGCAAAGTACCAGAAACCGCTGATCTGGATTAG 2907 0.4465 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRRRKRKGIDYNAEIPFEKRPPPGYFDVTDEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDHELEEIAKMGYASDLVGSEEIAEGSGATRALLANYAQTPSQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLFGGDNPELHPSDFSGVTPKKKEIQTPNPMLTPSATPGGAGLTPRSGMTPGRDGFSFGMTPKGTPLRDELHINEEMDLHESTKLELRRQADLKRSLHSGLSSLPQPKNEYQIVMQPAPEDVEEPEEKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLIIADGDKSSFVPPTSIEQADEMIRKELLSLLEHDNAKYPLDEKVNKERKKGVKRAANGSAVVPLIEDFEEDEMKDADQLIKEEAQYLREAMGHESEPLDEFVEAHRTCLNDLMYFPTRNAYGLSSVAGNMEKLAALQNEFENVRQKLDDGKEKAVRLDKKVMVLTQGYEMRAKKSLWPQIEATFKQMDTAATELECFLVLKKQEQLAASHRINNIWAEVEKQKELEKTLQKRYGDLLAEVERIQNTMNQYMVHSNQEEVAAKKRSLELVETSDETSMQGIENHESISHSDEHGSAMLVNSTHDETLVQLQAEATSDLKNDTGVDADKEQMTRDADVKLQDATPVAEEGVSATIVPGKSMDSCIAHGETTLEKGAPEDTSIERHGEDQDLKNPDNEAIDSHHGKVPETADLD 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2373 968 Coils Coil 167 187 - -
Lele13g2373 968 SMART sant 58 105 IPR001005 -
Lele13g2373 968 SMART sant 6 55 IPR001005 -
Lele13g2373 968 Pfam pre-mRNA splicing factor component 406 655 IPR021786 -
Lele13g2373 968 MobiDBLite consensus disorder prediction 113 177 - -
Lele13g2373 968 MobiDBLite consensus disorder prediction 380 446 - -
Lele13g2373 968 FunFam CDC5 cell division cycle 5-like 5 59 - -
Lele13g2373 968 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Lele13g2373 968 MobiDBLite consensus disorder prediction 924 968 - -
Lele13g2373 968 CDD SANT 10 53 IPR001005 -
Lele13g2373 968 MobiDBLite consensus disorder prediction 113 160 - -
Lele13g2373 968 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Lele13g2373 968 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 806 - -
Lele13g2373 968 Pfam Myb-like DNA-binding domain 10 70 - -
Lele13g2373 968 MobiDBLite consensus disorder prediction 222 236 - -
Lele13g2373 968 CDD SANT_CDC5_II 55 106 - -
Lele13g2373 968 FunFam CDC5 cell division cycle 5-like 60 120 - -
Lele13g2373 968 Gene3D - 5 59 - -
Lele13g2373 968 Gene3D - 60 114 - -
Lele13g2373 968 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Lele13g2373 968 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Lele13g2373 968 MobiDBLite consensus disorder prediction 399 413 - -
Lele13g2373 968 MobiDBLite consensus disorder prediction 265 285 - -
Lele13g2373 968 Coils Coil 683 717 - -
Lele13g2373 968 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Lele13g2373 968 MobiDBLite consensus disorder prediction 927 968 - -
Lele13g2373 968 MobiDBLite consensus disorder prediction 213 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2373 Lele-ChrLele13 29387756 29392275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2373 1 816 MYB-Related Transcription Factor Family AT1G09770 77.195 0.0 1239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele13g2373 Myb_Cef 9.7e-61 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2373 13 29387756 29392275 Lele15g0048 15 292189 296725 hybridization
Lele13g2373 13 29387756 29392275 Lele16g0049 16 325399 329787 hybridization