Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2370 ATGCATTCTACAACATTCCTTCCTCATTCCCAGGAAAGTGATGAAATTTCCTGGGGACCAGATCCACTTCAGGATATTCTTGATTTTCCTGGAATTGTTTCTGTCCAGAACGAGCAGTTGGAAAATAGTTCTTGTTACATACCTGATGACAATACTAAAAAAACTGATCTAGCGGAATGGGTTGATCAGTTAATATCGGTTGATGATTCTCTACACCCAAATTGGAGTCAGCTTCTTGGTGGTGATGATGTAACAGATTCAAAATCAAGGGAGTCCCAGGTTTCGCAGCAGCAGCATGTACCATCTGAAGAAATTAGTGCTCTTAATTCAGTGTCAACGGCACCACAAACTAAGCCAAGAATGCGTTGGACTCCAGAACTTCATGAGTCCTTTGTGGAAGCAGTTAATCAGCTTGGTGGAAGTGAGAAGGCTACTCCTAAGGGTGTCTTGAACCTGATGAAAATCGAGGGCCTTACCATCTATCATGTCAAAAGCCACCTACAGAAGTATAGAACTGCCAGATACAAACCTGAGTCATCCGAAGGAACTTCTGAGAAAAAGTTGACATCAATTGAAGCAATGAAATCTCTAGACTTGAAAACGAGTATGGGGATCACTGAAACTCTGCGGTTGCAAATGGAATTACAAAAACGACTTCATGAACAACTTGAGATTCAAAGAAAATTGCAGATTCAGATTGAAGACCAAGGCAAGCGTCTTCAGATGATGTTTGAGAGACAAAAGGAAATGGAGGACGGCAAGCTCAAGGGCTCCTCCTCCATGGATGAGCCGTCTGCTCCCATATCAAACAAGGTTGAAAATTCAGAAATGTCAAATGAGGGACATGACAAATCAGGAACTGCAAAAGCCGTGCCCGAAGGAAGTTCCCAGGGTGGAAGCACAAGGCTAAAAGCAGATGACAATATGGTTGAACAGGAGCTGGGAGAAGATCGGTTTGAGGGACCACCCACAAAACGTGTTAAGAGTTGA 990 0.4313 MHSTTFLPHSQESDEISWGPDPLQDILDFPGIVSVQNEQLENSSCYIPDDNTKKTDLAEWVDQLISVDDSLHPNWSQLLGGDDVTDSKSRESQVSQQQHVPSEEISALNSVSTAPQTKPRMRWTPELHESFVEAVNQLGGSEKATPKGVLNLMKIEGLTIYHVKSHLQKYRTARYKPESSEGTSEKKLTSIEAMKSLDLKTSMGITETLRLQMELQKRLHEQLEIQRKLQIQIEDQGKRLQMMFERQKEMEDGKLKGSSSMDEPSAPISNKVENSEMSNEGHDKSGTAKAVPEGSSQGGSTRLKADDNMVEQELGEDRFEGPPTKRVKS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2370 329 Pfam Myb-like DNA-binding domain 120 171 IPR001005 -
Lele13g2370 329 FunFam Myb family transcription factor 117 175 - -
Lele13g2370 329 MobiDBLite consensus disorder prediction 90 119 - -
Lele13g2370 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 175 IPR017930 -
Lele13g2370 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 93 289 IPR044848 GO:0003700
Lele13g2370 329 MobiDBLite consensus disorder prediction 250 329 - -
Lele13g2370 329 Gene3D - 117 176 - -
Lele13g2370 329 MobiDBLite consensus disorder prediction 306 329 - -
Lele13g2370 329 MobiDBLite consensus disorder prediction 1 20 - -
Lele13g2370 329 Pfam MYB-CC type transfactor, LHEQLE motif 203 249 IPR025756 -
Lele13g2370 329 SUPERFAMILY Homeodomain-like 116 172 IPR009057 -
Lele13g2370 329 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 118 172 IPR006447 GO:0003677
Lele13g2370 329 MobiDBLite consensus disorder prediction 80 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2370 Lele-ChrLele13 29378333 29380617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2370 2 302 G2-like Transcription Factor Family AT3G04450 48.632 5.69e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele13g2370 Myb_DNA-binding 1.5e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2370 13 29378333 29380617 Lele13g1917 13 26836517 26837320 CCT
Lele13g2370 13 29378333 29380617 Lele14g1852 14 25178068 25179743 CCT
Lele13g2370 13 29378333 29380617 Lele15g0490 15 2881857 2882666 CCT
Lele13g2370 13 29378333 29380617 Lele16g0513 16 2832267 2833913 CCT
Lele13g2370 13 29378333 29380617 Lele14g2298 14 27711289 27713573 ECH
Lele13g2370 13 29378333 29380617 Lele13g2370 13 29378333 29380617 ECH
Lele13g2370 13 29378333 29380617 Lele15g0050 15 302939 306946 hybridization
Lele13g2370 13 29378333 29380617 Lele16g0053 16 342015 345631 hybridization