LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele13g2350	ATGGATAGGGTTTTTTCAGTGGATGATATCTCCGACCCGTTCTGGTCACCGCCGATATCCACCGGAGCACATGACCCCTCCCATATGAACCGTAGCGCCTCCGAGTGGGCCCTCCAGCGCTTCCTCCAGGAAGCTTCTGTGCCCTCCCCGACCTCTCCGGCTTCTTCCTCCTTCCCTCCTCACCCTAACGATGACCGTGCGCTTCACATCAAGGATCAACCCAAACAGGACCCCGCTCTGAATACGGGGGTCACGCCGCTTCAGAACAATGGTCCCGTCCAGGCCAATGTACCTTCCCCCCCTCCGTCTATTCCCAACATTCCCGTTAATTCCGATGACTACCAGGCTTACCTCAAGAACAAACTCAACCTCGCCTGTGCCGCGGTCGCATTGTCTCGGCAGCAGGGATCCTTAATAAAAGCTCAAGATTCAGCTACTTTTGTTGAGAGTGGATCACAGGCTTCTAATTCTTCTCAAGTTGGACGTCAGGCTACTTTTAAAGGATCTGGTATATCTGGTCCATCTGGAAGTGATCCATCTAAATTACTGGATAAAGATACCAAAGCACCAGTTGGAATTCCTTCCTTACCTGTGATTCAAAAGAAGCCTGCAGTCGCAAACAAGCCAACAACAAGCGGATCATCAAGGGACCTATCAGATGATGATGACATTGAGGGAGAAACTGAGATGACTGAAAATATGGACCCTTCCGATGCAAAACGAGTAAGAAGGATGCTTTCCAATAGGGAATCCGCTAGACGTTCAAGAAGGAGAAAGCAGGCTCATTTAACTGAGCTTGAGACACAGGTTTCTCAATTAAGAGTTGAAAATTCGTCCTTGTTAAAGCGTCTTACTGATGTAAGCCAGAAGTACAGTGAATCTGGGGTTGACAACAGAGTGTTAAAAGCTGACATTGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACTGTCAAAAGAATTACTGGATTGAACCCAATGTTCCATGCTGTGTCCGAGATATCATCAATGGGAATCTCTTCGTTCGATGGAAGCCCTCCAGACACATCAGCAGATGCAACTGTTCCCCTGCAAGATGATCCAATCCATCACTTTTATCAACCTACAAATACTCCTTTGTCCAGTCATGATTTGAGAGTGAACAATGGATTGGGGGATGTTTGTTCAAATGAAAATGTACTGCAGAGCAGGGCAGCTGTGGTAGCTGGGAACAAGATGGGACAAACAGCTTCCCTTCAGAGGGTGGCTAGCTTGGAACATCTGCAGAAGAGAATTTGTGGTGGTGCAGATTCATCTGGACCTTCTTCCAGTGGAGATCACTAG	1326	0.4766	MDRVFSVDDISDPFWSPPISTGAHDPSHMNRSASEWALQRFLQEASVPSPTSPASSSFPPHPNDDRALHIKDQPKQDPALNTGVTPLQNNGPVQANVPSPPPSIPNIPVNSDDYQAYLKNKLNLACAAVALSRQQGSLIKAQDSATFVESGSQASNSSQVGRQATFKGSGISGPSGSDPSKLLDKDTKAPVGIPSLPVIQKKPAVANKPTTSGSSRDLSDDDDIEGETEMTENMDPSDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDVSQKYSESGVDNRVLKADIETLRAKVKMAEETVKRITGLNPMFHAVSEISSMGISSFDGSPPDTSADATVPLQDDPIHHFYQPTNTPLSSHDLRVNNGLGDVCSNENVLQSRAAVVAGNKMGQTASLQRVASLEHLQKRICGGADSSGPSSSGDH	441

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele13g2350	441	SMART	brlzneu	236	300	IPR004827	GO:0003700\|GO:0006355
	Lele13g2350	441	FunFam	BZIP transcription factor	238	289	-	-
	Lele13g2350	441	Gene3D	-	239	294	-	-
	Lele13g2350	441	Pfam	Basic leucine-zipper C terminal	307	430	IPR020983	-
	Lele13g2350	441	Pfam	bZIP transcription factor	239	291	IPR004827	GO:0003700\|GO:0006355
	Lele13g2350	441	Coils	Coil	249	283	-	-
	Lele13g2350	441	MobiDBLite	consensus disorder prediction	150	261	-	-
	Lele13g2350	441	MobiDBLite	consensus disorder prediction	1	106	-	-
	Lele13g2350	441	CDD	bZIP_plant_GBF1	241	292	IPR045314	GO:0003700\|GO:0006355
	Lele13g2350	441	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	238	293	IPR004827	GO:0003700\|GO:0006355
	Lele13g2350	441	MobiDBLite	consensus disorder prediction	23	52	-	-
	Lele13g2350	441	Coils	Coil	298	325	-	-
	Lele13g2350	441	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	243	258	IPR004827	GO:0003700\|GO:0006355
	Lele13g2350	441	MobiDBLite	consensus disorder prediction	150	176	-	-
	Lele13g2350	441	PANTHER	BASIC LEUCINE ZIPPER 63	1	430	-	-
	Lele13g2350	441	SUPERFAMILY	Leucine zipper domain	240	290	IPR046347	GO:0003700\|GO:0006355
	Lele13g2350	441	MobiDBLite	consensus disorder prediction	233	249	-	-
	Lele13g2350	441	MobiDBLite	consensus disorder prediction	78	94	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele13g2350	Lele-ChrLele13	29290959	29294354	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele13g2350	1	329	bZIP Transcription Factor Family	AT4G02640	41.642	1.58e-48	169

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Lele13g2350		bZIP_C	5.9e-43	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele13g2350	13	29290959	29294354	Lele13g2350	13	29290959	29294354	ECH
	Lele13g2350	13	29290959	29294354	Lele15g0067	15	388990	392661	hybridization
	Lele13g2350	13	29290959	29294354	Lele16g0069	16	426916	432522	hybridization