Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2344 ATGCGCGCGCGGGTCCCATCGTCCCAGTCTTTTGAAGACGAAGTCAACGATATGAGGCCCATCCACTGCTCATCAACCCCAGTCCAGCCCAGAAATGACATATGGGCCTTATTGGAAACCCAAACCCCACAGTCCCTTAAATCTATGGCCGAACACTTACGCTTTGTCTGGGAACAAGTTGGGGGAAGAAAGAAAATTGTGGATGAGAATTTTGGAGGAATAAAACTGACGAAGACAAAATTTAATTCTTATCTCTTCTTAGGCTGTCTGGAGGAAAAATTTATTATTGATCACATGGAGCAGTATGAAATACTGGAGCAAATTGGAAAAGGTGCTTTTGGATCCGCTCTTCTTGTGCGGCATAAACATGAGAAAAAAAAATATGTGCTGAAGAAAATTCGCCTTGCTCGCCAAACTGAGCGGTCTCGTAGATCTGCACACCAGGAGATGGAGCTAATCTCTAAATTAAGAAATCCATTTATTGTTGAGTATAAAGATTCCTGGGTAGAAAAGGGGTGCTATGTGTGCATTATTATAGGTTATTGTGAGGGCGGAGATATGGCAGAAGCTATAAAGAAGGCTAATGGTGTTCTTTTTCCTGAGGAGAAACTTTGTAAATGGCTCGTTCAACTTCTTATGGCCCTTGACTACTTACACCTGAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTTTTGACAAAAGATCGAGACATACGCCTTGGTGATTTTGGACTTGCCAAAATATTGACTTCCGATGATCTTGCTTCCTCTGTTGTCGGAACTCCTAGTTACATGTGCCCTGAGCTCTTGGCTGATATTCCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGCTGTATATATGAAATGGCAGCTCACAAGCCTGCATTTAAAGCATTTGATATACAGGCACTAATCAACAAGATTAACAAGTCTAGTGTGGCCCCACTGCCAACAAAGTATTCTGGTGCATTTCGGAGTCTTGTTAAAAGCATGCTGCGGAAAAATCCTGAGCTTAGACCTCGTGCTGCAGAGCTGCTTGGACACCGGCATCTTCAACCTTATGTTCACAAGATCCATCTAAAGCTTAATAACCCCAGGCGAAGTACACTACCAGTTCATTGGTCAGAATCCAACTACATGAATAAAACTAGATTTCTGGAGTCAGAAGATGACCCTGTTTCAATATACAGAGATAAGCGACATTCTTTTAGAAATGATCTGACTCTTAATCCTAGCATATCTGGAGCTGAGCAAGATTCTTTTTGTTCTACCCTAGAAATAGATTGTGCACCAGATCATCTGAATCAAAGGTTGGCAGAGCTATGCATTGGTGATAGCCTCAAGGTGAAGTCCGTCTGTAAGCCTGTTGTTTCAAGGGTATCTAGTTTCACCAAGACTCCAAGACAAACCTCCATAAAGGCTTCTGCCACCGCTAAGAAATCAATGGAACCCACAAAAAAGCGCGTATCGCTTCCTACTCCACGCAAAGCCAGACAATCAGTCTATACAACTCGCAAAGCATCATTTCCATTGCATACAAGAAGTTCTGATCAACACTCTCTTCATGGGCCTGGTATTGGTTTACTTAGCCATATAAAGTCTCCAGACATTTCAGTAAACTCTCCTAGAATTGATAAGATAGCTGAATTCCCACTAGCATCATATGAGGAACCACTTTTTCCCATCTATAGAAGTCCAACTTCAGCCCAGGATTCATCAGGCTCCACACCTTGTGGTGATCGTTCAATCATGAAAGATAAATGCACAGTTCAGATATGTGATAGAGCCTCTGTCAAGCATCGATTGACAGATTCATGGCAGGGAATCAAGCTAAACACGTTTCAGGAAAATGCTGAGGATAAAAGTGGCTCCTCTGATCAAAATGCAACTGCCGGAGCATCAAGCCATGCCTCTTCAGACATGCGCCGCCGGCAGTTTGACACTTCATCATTCCAACAAAGGGCTGAAGCCTTGGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTACAGCATGAAAGGTATGAAGAACTAGGGGTTTTATTGAAACCATTTGGGCCAGGTAAGGTCTCTCCAAGGGAAACTGCCATCTGGTTGAGTAAGAGCTTCAAAGAGAACACTCTCAACCGTGAAGAATCCCTATAA 2157 0.4261 MRARVPSSQSFEDEVNDMRPIHCSSTPVQPRNDIWALLETQTPQSLKSMAEHLRFVWEQVGGRKKIVDENFGGIKLTKTKFNSYLFLGCLEEKFIIDHMEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALDYLHLNHILHRDVKCSNIFLTKDRDIRLGDFGLAKILTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKAFDIQALINKINKSSVAPLPTKYSGAFRSLVKSMLRKNPELRPRAAELLGHRHLQPYVHKIHLKLNNPRRSTLPVHWSESNYMNKTRFLESEDDPVSIYRDKRHSFRNDLTLNPSISGAEQDSFCSTLEIDCAPDHLNQRLAELCIGDSLKVKSVCKPVVSRVSSFTKTPRQTSIKASATAKKSMEPTKKRVSLPTPRKARQSVYTTRKASFPLHTRSSDQHSLHGPGIGLLSHIKSPDISVNSPRIDKIAEFPLASYEEPLFPIYRSPTSAQDSSGSTPCGDRSIMKDKCTVQICDRASVKHRLTDSWQGIKLNTFQENAEDKSGSSDQNATAGASSHASSDMRRRQFDTSSFQQRAEALEGLLEFSARLLQHERYEELGVLLKPFGPGKVSPRETAIWLSKSFKENTLNREESL 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2344 718 Gene3D Transferase(Phosphotransferase) domain 1 182 373 - -
Lele13g2344 718 ProSiteProfiles Protein kinase domain profile. 102 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g2344 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Lele13g2344 718 FunFam Serine/threonine-protein kinase Nek2 99 181 - -
Lele13g2344 718 MobiDBLite consensus disorder prediction 622 644 - -
Lele13g2344 718 Gene3D Phosphorylase Kinase; domain 1 87 181 - -
Lele13g2344 718 SMART serkin_6 102 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g2344 718 MobiDBLite consensus disorder prediction 476 508 - -
Lele13g2344 718 SUPERFAMILY Protein kinase-like (PK-like) 99 400 IPR011009 -
Lele13g2344 718 CDD STKc_Nek 101 351 - -
Lele13g2344 718 Pfam Protein kinase domain 102 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g2344 718 FunFam Serine/threonine-protein kinase Nek3 184 430 - -
Lele13g2344 718 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524
Lele13g2344 718 MobiDBLite consensus disorder prediction 622 653 - -
Lele13g2344 718 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 99 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2344 Lele-ChrLele13 29251438 29260483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2344 108 357 MAP Kinase Kinase Kinase AT1G53570 32.157 1.24e-35 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lele13g2344 Pkinase 1.1e-62 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2334 13 29189336 29192718 Lele13g2344 13 29251438 29260483 CCT
Lele14g2264 14 27534499 27538026 Lele13g2344 13 29251438 29260483 CCT
Lele15g0081 15 480132 484167 Lele13g2344 13 29251438 29260483 CCT
Lele16g0088 16 521993 525559 Lele13g2344 13 29251438 29260483 CCT
Lele13g2344 13 29251438 29260483 Lele13g2344 13 29251438 29260483 ECH
Lele13g2344 13 29251438 29260483 Lele15g0071 15 427009 432172 hybridization
Lele13g2344 13 29251438 29260483 Lele16g0076 16 457972 465597 hybridization