Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2323 ATGCACCGTGTGGGTAGTGGAGGGAACTCAAACAATTCAATTCGACATCGAAAGGAGAAGAGGCTAACATATGTGTTGAATGACTCTGATGACACCAAGCATTTTGCAGGCATAAATTGTTTGGCTTTGCTCAAGTCATCAGTATCTGATGGGTCTGATTATCTCTTCACTGGAAGCCGTGATGGCACATTAAAACGATGGGAGTTGGCCGAGGATGCTGCAACATGCTCAGCTACTTTTGAGTCTCACGTGGACTGGGTCAATGACTCTGTTCTTGTGGGTGATAATAAGCTTGTTTCTTGTTCTTCAGATACGACCCTTAAGACATGGAATCCCTCGTCTGATGGAACTTGTACTAGGACCTTCCGTCAACACTCTGATTATGTTACTTGCCTTGCAGCAGCTGAAAAAAATAGCAATATTGTTGCCTCTGGTGGACTTGGTGGGGAGGTCTTTGTATGGGATCTTGAAGCTGCCCTTGCGCCAGTCTCACAGTGCTATGATATTTTGGACGAGGGTTGTTCAAATGGTATCCATGGGCCTGGAAACTCCTTACCAATGACAAGCTTACGTAATATTAGCTCTGCCAACAATAATATTATCTCTAGTAACACCACTCCCATGCACACTACTCAGTCTCATGGGTACATTCCAATCGCTGCCAAAGGCCACAAGGAGTCTGTTTATGCGTTAGCAATGAATGAAGGCGGAACCCTTCTTGTCTCTGGTGGCACAGAAAAGGTTGTACGTGTTTGGGATCCAAGGTCTGGATCAAAGACCATGAAATTGAGAGGGCATACAGATAACATAAGGGCTCTGCTTCTAGATTCAACTGGCAGGTTTTGTTTGTCAGGGTCTTCTGACTCTATGATAAGACTTTGGGATCTTGGTCAGCAGCGTTGCGTGCATTCTTATGCAGTTCATACAGATTCTGTTTGGGCACTTGCTAGCACCCCATCCTTTAGTCATGTTTACAGCGGTGGGAGAGACTTTTCATTATACTTGACAGATTTGCAAACAAGAGAGAGTGTTTTGCTTTTTGCTGGCGAACACCCCATCTTGCAACTGGCTATGCATGATGACACTGTATGGGTTGCCTCAACAGACTCATCGGTTCACAGATGGCCTGCGGAAGTATGTAACCCTCAAAAGATTTTCCAAAGGGGCAATTCATTTTTAGCTGGAAATTTGTCCTTTTCTAGGGCAAGGGTGTCTCTCGAAGGATCTACCCCTGTTCCTGTTTATAAAGAACCAACCTTAACCATTGCTGGCTCCCCAGGAATAGTACAACATGAAATTTTAAATAACAAGAGGCATGTCCTGACAAAGGATACTGCTGGTTCAGTGAAGTTGTGGGAGATTACTAGGGGTGCTGTCATTGAAGATTATGGGAAGATTTCGTTTGAGGAGAAAAAACAAGAGCTATTTGAGATGGTTAGCATTCCCACTTGGTTCACAGTGGACACTAGGCTCGGATGTTTATCTGTTCATTTAGACACACCTCAATGCTTCTCTGCAGAGATGTATTCGGCGGACCTAAACATCGTTGGCAAGCCTGAAGATGATAAGGTTAATTTGGCTCGTGAAACACTTAAAGGGCTCTTGGCACATTGGGTGATGAAACGGAAGCAAAGAATGGGATCGCATACTCCTGCTAATGGTGAATTGCTGTTGGGAAAGGAAATGACAACCAGAAGTCTTGCCCATTCAAGAATTGAGGTTGATAGTGGTACTGAGCATGATGCTATGGTTTATCCTCCTTTTGACTTTTCTATGGTGTTCCCTCCTTCCATTATTACTGAGGGCAGTCAAGGGGGTGCTTGGAGGAAAAAAATTACCAATCTGGATGGAACGGAGGATGATAAAGACTTTCCCTCTTGGTGCTTGGACTGTGTATTGCATAATCGGTTACCTCCCAGAGAAAATACCAAATGCAGTTTCTATTTGCATCCCTGTGAAGGTTCTAGCATTCAGATTCTCACGCAAGGGAAGTTAAGTGCTCCACGTATATTGAGAATTCACAAAGTTATTAATTACGTGCTAGAAAAGATGGTCCTTGACAAACCATTGGATAGCTTAAATGCTGATGGTAGTTTTGTACCGGGACTACAACATCAAACAGTTGGGGATGGATCTTTCCGCTCTGGATTGAAGCCTTGGCAAAAGCTTAGGCCTTCTATTGAGATACTGTGCAACAATCAGGCCTTGTCTCCTGAGATGAGTTTAGCCACAGAAGGTGACTGTATACTGCACGTGCATCAGAGGTTATCTCCGTGTAAAATACTACCGAGCATTGTTTTTTCTGGAAGTGCCTGTGTTGATCAGCGGTGTCGTTAG 2337 0.4412 MHRVGSGGNSNNSIRHRKEKRLTYVLNDSDDTKHFAGINCLALLKSSVSDGSDYLFTGSRDGTLKRWELAEDAATCSATFESHVDWVNDSVLVGDNKLVSCSSDTTLKTWNPSSDGTCTRTFRQHSDYVTCLAAAEKNSNIVASGGLGGEVFVWDLEAALAPVSQCYDILDEGCSNGIHGPGNSLPMTSLRNISSANNNIISSNTTPMHTTQSHGYIPIAAKGHKESVYALAMNEGGTLLVSGGTEKVVRVWDPRSGSKTMKLRGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCVHSYAVHTDSVWALASTPSFSHVYSGGRDFSLYLTDLQTRESVLLFAGEHPILQLAMHDDTVWVASTDSSVHRWPAEVCNPQKIFQRGNSFLAGNLSFSRARVSLEGSTPVPVYKEPTLTIAGSPGIVQHEILNNKRHVLTKDTAGSVKLWEITRGAVIEDYGKISFEEKKQELFEMVSIPTWFTVDTRLGCLSVHLDTPQCFSAEMYSADLNIVGKPEDDKVNLARETLKGLLAHWVMKRKQRMGSHTPANGELLLGKEMTTRSLAHSRIEVDSGTEHDAMVYPPFDFSMVFPPSIITEGSQGGAWRKKITNLDGTEDDKDFPSWCLDCVLHNRLPPRENTKCSFYLHPCEGSSIQILTQGKLSAPRILRIHKVINYVLEKMVLDKPLDSLNADGSFVPGLQHQTVGDGSFRSGLKPWQKLRPSIEILCNNQALSPEMSLATEGDCILHVHQRLSPCKILPSIVFSGSACVDQRCR 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2323 778 SMART WD40_4 19 68 IPR001680 GO:0005515
Lele13g2323 778 SMART WD40_4 256 295 IPR001680 GO:0005515
Lele13g2323 778 SMART WD40_4 73 111 IPR001680 GO:0005515
Lele13g2323 778 SMART WD40_4 340 376 IPR001680 GO:0005515
Lele13g2323 778 SMART WD40_4 115 155 IPR001680 GO:0005515
Lele13g2323 778 SMART WD40_4 298 337 IPR001680 GO:0005515
Lele13g2323 778 SMART WD40_4 210 253 IPR001680 GO:0005515
Lele13g2323 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 262 IPR001680 GO:0005515
Lele13g2323 778 SUPERFAMILY WD40 repeat-like 34 457 IPR036322 GO:0005515
Lele13g2323 778 Gene3D - 8 176 IPR015943 GO:0005515
Lele13g2323 778 Pfam WD domain, G-beta repeat 259 295 IPR001680 GO:0005515
Lele13g2323 778 Pfam WD domain, G-beta repeat 116 155 IPR001680 GO:0005515
Lele13g2323 778 Pfam WD domain, G-beta repeat 300 335 IPR001680 GO:0005515
Lele13g2323 778 Pfam WD domain, G-beta repeat 222 253 IPR001680 GO:0005515
Lele13g2323 778 Pfam WD domain, G-beta repeat 34 67 IPR001680 GO:0005515
Lele13g2323 778 Pfam Domain of unknown function (DUF3337) 622 744 IPR021772 -
Lele13g2323 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 122 157 IPR001680 GO:0005515
Lele13g2323 778 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
Lele13g2323 778 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Lele13g2323 778 Gene3D - 177 482 IPR015943 GO:0005515
Lele13g2323 778 PANTHER WD REPEAT-CONTAINING PROTEIN 48 575 744 - -
Lele13g2323 778 CDD WD40 34 375 - -
Lele13g2323 778 PRINTS G protein beta WD-40 repeat signature 55 69 IPR020472 -
Lele13g2323 778 PRINTS G protein beta WD-40 repeat signature 240 254 IPR020472 -
Lele13g2323 778 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Lele13g2323 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 296 - -
Lele13g2323 778 FunFam WD repeat-containing protein 48 195 482 - -
Lele13g2323 778 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 221 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2323 Lele-ChrLele13 29112465 29121024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2323 223 378 Miscellaneous Gene Families AT5G08390 26.415 1.03e-12 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2318 13 29094133 29098011 Lele13g2323 13 29112465 29121024 CCT
Lele14g2253 14 27443859 27448047 Lele13g2323 13 29112465 29121024 CCT
Lele15g0093 15 570962 574823 Lele13g2323 13 29112465 29121024 CCT
Lele13g2311 13 29035429 29037290 Lele13g2323 13 29112465 29121024 CCT
Lele14g2242 14 27366630 27368488 Lele13g2323 13 29112465 29121024 CCT
Lele15g0103 15 626140 627983 Lele13g2323 13 29112465 29121024 CCT
Lele16g0112 16 688153 690003 Lele13g2323 13 29112465 29121024 CCT
Lele13g2323 13 29112465 29121024 Lele15g0089 15 548889 556135 hybridization
Lele13g2323 13 29112465 29121024 Lele16g0099 16 591726 601793 hybridization