Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2318 ATGGGGTGCGTGATTGGTCGAGAAGTCTCATCTGAAATAACCTCAGAGGTGAAAGAGGAGAGGAATTTGAGTGCTGAATCGAACGGGAAGATAGATGAGAACTCCACGGGGACATCTGAGGGGAAAATGGTTGAGGTTCAGAATGTTGGCAACCAAAACGAAGAGAAAGATGGTGATGATGGGGCCCACGTCCAGCAGCCCCGGCGCAGAAGGAGAAGGTCAAAGCCAAACCCAAGGCTAAGTAACCCTCCAAAGCATTTGCGGGGGGAGCAAGTCGCAGCTGGGTGGCCCCCCTGGCTTACGGCAGTGTGTGGAGAAGCACTTAGTGGGTGGATTCCGCGGAAGGCTGACACATTTGAGAAAATTGATAAGATTGGGCAAGGGACGTATAGCAATGTTTACAAAGCTAAAGACATGTTGACTGGTAAAATTGTTGCATTAAAGAAGGTTCGATTTGACAATTTGGAGCCTGAGAGTGTGAAGTTCATGGCCAGAGAGATTCTTATTTTGCGAAGATTGGATCATCCCAATGTTGTAAAGTTGGAAGGTTTAGTTACCTCAAGAATGTCCTGTAGTTTGTATTTGGTGTTTCCTTATATGGAGCATGATTTGGCTGGACTTGCTGCAAGCCCAGGAATCAAGTTTACTGAGCCTCAGGTCAAATGTTACGTGCACCAACTATTATCAGGACTTGAGCATTGTCATAACCGTCTAATACTTCACCGTGATATTAAAGGATCAAATCTTCTTATTGACAATGATGGAATACTTAAGATAGCTGACTTTGGATTGGCATCTTTCTTTGATCCTAACCAGAAGCTACCAATGACTAATCGTGTAGTTACACTTTGGTATCGACCTCCTGAGTTGCTTCTTGGCGCCACAGAATATGGTGTGGCAGTGGACCTTTGGAGTGCAGGTTGCATTTTGGGAGAGTTATTGGCAGGAAAGCCAATTATGCCTGGTCGCACAGAGGTGGAGCAACTGCATAAGATATACAAACTATGTGGTTCACCCTCAGATGAGTACTGGAAGAAGTCAAAGTTGCCTAATGCTACCTTGTTTAAACCTCGAGAGCCTTACAAGAGATGCATACGAGAGACATTTAAAGATTTTCCACCTTCTGCACATACACTTATGGATACTCTTCTTGCACTTGATCCAGCAGAACGGAAGACAGCATCAGATGCCCTGAGAAGTGAGTTCTTCAGCACAGAACCTTATACCTGTGATCCTTCTAGTCTTCCCAAATATCCGCCAAGCAAGGAAATGGATGCTAAACGACGAGATGATGAAACGAGAAGACAACGAGCTGCAGGCAAAGCTCATGTTGACGGTTCAAAGAAACTCCGAACACGTAATCGAGCCAAACCTAATCTTGTTCCTGAAGCCAATGCTGAGCTTCAATCCAATATTGATAGGAGGCGTCTAATAACTCGTGCAAATGCCAAGAGCAAGAGTGAGAAGTTCCCACCACCACATCAAGATGGACAACTTGGCTTTCCTTTGGGATCTTCACATCATATTGATTCAGATATCGTTCCTCCTGATGTCTCTTTTAGTTCAACCTCATTTACCTATTCAAAAGAACCATTCCAAGCGTGGTCAGGTCCCATTGTTGCTCCCAAGCAGAAGAAACATGCTCCCGGTGATGCAGTGGATTTATCAAAGCAATGTACAAGTGCCCTCAAGGATAAACGTTAA 1704 0.4478 MGCVIGREVSSEITSEVKEERNLSAESNGKIDENSTGTSEGKMVEVQNVGNQNEEKDGDDGAHVQQPRRRRRRSKPNPRLSNPPKHLRGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFPYMEHDLAGLAASPGIKFTEPQVKCYVHQLLSGLEHCHNRLILHRDIKGSNLLIDNDGILKIADFGLASFFDPNQKLPMTNRVVTLWYRPPELLLGATEYGVAVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIRETFKDFPPSAHTLMDTLLALDPAERKTASDALRSEFFSTEPYTCDPSSLPKYPPSKEMDAKRRDDETRRQRAAGKAHVDGSKKLRTRNRAKPNLVPEANAELQSNIDRRRLITRANAKSKSEKFPPPHQDGQLGFPLGSSHHIDSDIVPPDVSFSSTSFTYSKEPFQAWSGPIVAPKQKKHAPGDAVDLSKQCTSALKDKR 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2318 567 MobiDBLite consensus disorder prediction 52 66 - -
Lele13g2318 567 MobiDBLite consensus disorder prediction 28 51 - -
Lele13g2318 567 SMART serkin_6 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g2318 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Lele13g2318 567 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Lele13g2318 567 MobiDBLite consensus disorder prediction 536 567 - -
Lele13g2318 567 Pfam Protein kinase domain 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g2318 567 SUPERFAMILY Protein kinase-like (PK-like) 114 410 IPR011009 -
Lele13g2318 567 MobiDBLite consensus disorder prediction 1 91 - -
Lele13g2318 567 PANTHER CELL DIVISION PROTEIN KINASE 117 407 - -
Lele13g2318 567 Gene3D Transferase(Phosphotransferase) domain 1 202 443 - -
Lele13g2318 567 MobiDBLite consensus disorder prediction 407 448 - -
Lele13g2318 567 MobiDBLite consensus disorder prediction 421 448 - -
Lele13g2318 567 FunFam probable serine/threonine-protein kinase At1g54610 106 201 - -
Lele13g2318 567 CDD STKc_CDK9_like 119 403 - -
Lele13g2318 567 ProSiteProfiles Protein kinase domain profile. 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele13g2318 567 MobiDBLite consensus disorder prediction 12 27 - -
Lele13g2318 567 FunFam probable serine/threonine-protein kinase At1g54610 202 443 - -
Lele13g2318 567 Gene3D Phosphorylase Kinase; domain 1 106 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2318 Lele-ChrLele13 29094133 29098011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2318 111 441 Core Cell Cycle Gene Families AT5G10270 52.161 1.95e-120 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lele13g2318 Pkinase 2.1e-66 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2318 13 29094133 29098011 Lele13g2323 13 29112465 29121024 CCT
Lele13g2318 13 29094133 29098011 Lele14g2255 14 27453701 27461704 CCT
Lele13g2318 13 29094133 29098011 Lele15g0089 15 548889 556135 CCT
Lele13g2318 13 29094133 29098011 Lele16g0099 16 591726 601793 CCT
Lele13g2309 13 29022590 29027132 Lele13g2318 13 29094133 29098011 CCT
Lele14g2240 14 27350822 27358848 Lele13g2318 13 29094133 29098011 CCT
Lele15g0105 15 634251 635320 Lele13g2318 13 29094133 29098011 CCT
Lele16g0114 16 698369 699478 Lele13g2318 13 29094133 29098011 CCT
Lele13g2318 13 29094133 29098011 Lele15g0093 15 570962 574823 hybridization