Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2316 ATGGCTTTTGATTTAATTTCCGTTTTTCCGAAATTGCAACTGCTTATGACTTCTGATCATGCTTCCGTGGTCTCCATGAACCTATTTGTGGCACTCCTGTGTGCTTGTATTGTCATTGGCCATCTTCTCGAGGAGAATCGATGGGTGAATGAGTCCATCACCGCCCTTTTGATTGGTCTTTGCAGTGGCGTAGTCATTTTGCTGATAAGGGGGGGTCAAAACTCGCATCTTCTTGTTTTCAGCGAAGATCTTTTCTTTATATACCTTCTGCCACCTATCATATTTAATGCCGGGTTTCAGGTGAAAAAGAAGCAGTTTTTTGTAAATTTCATCACTATTGTGCTGTTTGGTGCTGTTGGTACATTAATATCTTGTGCCATCATAACTTTTGGTGTTACACAAGTTTTTAGAAAGATGGGCATTGGTCCGCTTGAGATTGGGGATTATCTAGCAATTGGTGCAATATTTGCCGCAACAGATTCTGTGTGCACATTGCAGGTGTTAAATCAGGACGAGACGCCTTTACTCTACAGCCTTGTGTTTGGAGAGGGTGTTGTGAACGATGCTACGTCTGTTGTGCTTTTCAATGCAATCCAAAGCTTTGATCTCAACAAACTAGACTCTGGAATTGCTTTAGACTTTCTTGGCAACTTTCTGTACCTGTTTATTGCAAGCACATTGCTCGGTGTTCTGACTGGTCTGCTTAGTGCTTATATTATTAAGAAGCTATATATTGGCAGGCACTCCACGGATCGTGAAGTTGCTCTAATGATGCTGATGGCATACCTTTCCTACATGCTGGCTGAATTATCCTATCTGAGTGGTATCCTCACCGTATTCTTCTGTGGGATTGTTATGTCTCATTATACTTGGCATAACGTGACTGAGAGTTCCAGAGTCACTACGAAGCATGCTTTTGCAACCTTGTCGTTTGTTGCTGAGACATTTATCTTCCTTTATGTTGGTATAGATGCCCTGGACATTGAAAAATGGAGGTTTGTTAGTGATAGCCCTGGAAAATCAATAGCAGTGAGTTCAGTGTTATTGGGTCTAGTACTCACTGGAAGAGCAGCTTTTGTTTTCCCCCTATCCTTCCTATCCAACTTGGTTAAAAAGTCACCAAATGAGAAAATCAGCTTCCGTCAGCAAGTGATCATATGGTGGGCTGGTTTGATGAGAGGTTCTGTTTCAATGGCACTGGCGTATAATCAGTTCACCATGTCGGGCCATACTCAATTGCGATCCCATGCAATGATGATCACTAGCACAATCACAGTAGTGCTCTTCAGCACAGTGGTCTTTGGTTTAATGACTAAGCCACTCATAAGGTATTTGCTGCCTAATGTTAAACACACAAGCAGCGTGGTGACGACGGAATCATCTACTCCAAAATCTTTTAACGTTCCACTTCTTGGGGCTTCCCAAGATTCTGAAGCTGATATCGATGGAAATGCACTTATTCGTCCAAGTAGCATTCGTTTATTACTCACCACTCCTACACATACAGTTCATCGCCACTGGCGTAAGTTCGACAACGCATTCATGCGCCCAGTTTTTGGAGGCAGGGGTTTTGTTCCTGTGGAGCCTGGCTCACCTACTGAACGAAACGGTCAACAGTGGCAAGGAGAATAA 1632 0.4301 MAFDLISVFPKLQLLMTSDHASVVSMNLFVALLCACIVIGHLLEENRWVNESITALLIGLCSGVVILLIRGGQNSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFITIVLFGAVGTLISCAIITFGVTQVFRKMGIGPLEIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLNKLDSGIALDFLGNFLYLFIASTLLGVLTGLLSAYIIKKLYIGRHSTDREVALMMLMAYLSYMLAELSYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAETFIFLYVGIDALDIEKWRFVSDSPGKSIAVSSVLLGLVLTGRAAFVFPLSFLSNLVKKSPNEKISFRQQVIIWWAGLMRGSVSMALAYNQFTMSGHTQLRSHAMMITSTITVVLFSTVVFGLMTKPLIRYLLPNVKHTSSVVTTESSTPKSFNVPLLGASQDSEADIDGNALIRPSSIRLLLTTPTHTVHRHWRKFDNAFMRPVFGGRGFVPVEPGSPTERNGQQWQGE 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2316 543 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 25 453 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Lele13g2316 543 Pfam Sodium/hydrogen exchanger family 29 442 IPR006153 GO:0006812|GO:0015299|GO:0016020|GO:0055085
Lele13g2316 543 Gene3D - 146 197 - -
Lele13g2316 543 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Lele13g2316 543 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Lele13g2316 543 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Lele13g2316 543 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Lele13g2316 543 PANTHER SODIUM/HYDROGEN EXCHANGER 18 519 IPR018422 GO:0006812|GO:0015299|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2316 Lele-ChrLele13 29072845 29079038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2316 7 539 Antiporters AT3G05030 75.791 0.0 831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2308 13 29015305 29020492 Lele13g2316 13 29072845 29079038 CCT
Lele15g0106 15 637658 642832 Lele13g2316 13 29072845 29079038 CCT
Lele16g0116 16 703374 706595 Lele13g2316 13 29072845 29079038 CCT
Lele13g2316 13 29072845 29079038 Lele13g2316 13 29072845 29079038 ECH
Lele13g2316 13 29072845 29079038 Lele15g0097 15 591748 595288 hybridization
Lele13g2316 13 29072845 29079038 Lele16g0104 16 635962 641474 hybridization