Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2308 ATGAAGAATCACGCCAAAGAAAATAATAGCAAGAGCAATGGGTTTATCCCCTCTTCTTTTAAGTTTATATCTTCTTGCATTAAGACTGCCTCCTCCGGAGTCCTTTCTGCCGGCGCCTCCGTCGCCGCCTCCATTTATGCCGATGGGCATGACCGTAAAGACCAGGTGCTTTGGGCTTGCTTTGACAGGCTAGAACTTGGCCCAACTTCTTTCAAACATGTCCTCTTACTCGGATACTCCAACGGCTTTCAAGTTCTTGATGTGGATGATGCCTCTAATGTCCGTGAACTTGTCTCCAAACGGGATGATCCAGTTTCATTTTTACAGATGCAGCCTATCCCTACAAAGGCTGAGGGGTGTAAAGGATTTAGTGCATCACATCCATTACTCTTGGTCGTTGCATGTGATAAATCAAAGATCCCAGGTACAATGCAAAATGGAAGAGATGGATATACTGAACCTCAAGCTGAAAACATTATCAGCTCAGCTACTTCTGTTCGATTTTACTCACTTAGGTCCTATAGCTATGTTCACGCCCTGAGATTTCGGTCAACCGTGTATATGGTTAGATGCAGTCCCCAAATAGTGGCTGTGGGTCTTGCTGCACAAATATACTGTTTTGATGCTCTTACTCTTGAGAATAAATTCAGTGTCCTCACTTATCCTGTACCTCAGCTGGGAGTCCAAGGAATGGTTGGGGTTAATATTGGATATGGTCCGATGGCCGTAGGGTCCCGTTGGTTAGCTTATGCTTCTATCAACCCATTGCCATCAAATGCTGGTCGTCTAAGTCCTCAGAGTCTTACTCCACCGGCTGTCAGCCCATCAAGTTCACCTGGCAATGGAAACCTGGTAGCTCGATATGCAATGGAATCTAGCAAGCATCTGGCTGCTGGTCTGATAAACCTTGGCGACATGGGATACAAGACACTGTCGAAATACTATCAGGATCTTATACCAGATGGATCTAGTTCTCCTGTATCATCAAATTCAAGCTGGAAAGTCAGTCGGTATACACCACATTCTACAGAAGCAGATGCTGCTGGGGTGGTTGCTATCAAGGATTTAGTTTCTAGAGCTGTTGTGGCGCAATTTAGAGCCCATACTAGTCCCATCTCTGCTTTGTCTTTTGACCCTAGTGGGACACTTCTAGTTACCACATCAATTCACGGTAACAACATTAATATATTTCGAATTATGCCATCCTGCTCAAGGAACGGATCAGGTTTCCAAAGCAGTGATTGGAGTTGTTCTCATGCACATCTATACAAGCTACACCGTGGCATGACATCAGCAGTCATACAAGATATATGCTTTAGTCATTACAGTCAGTGGGTTGCAATTATTTCTTCCAAGGGTACTTGTCATATATTTGTACTTGCCCCATTTGGTGGTGAGACAGTTCTTCAGATACAGAATCCGGACACAGAGAGACTGACTTTTTTGCCAACTTTTTCTCTGCCATGGTGGTTCACTCCTCATTTCACAGTAAACCAGCAACAGTTTTCCCCACCCCCACCTCCTGTCACTCTCTCTGTGGTTAGCAGAATAAAAAATAGTAATGCCGGATGGCTTAATACTGTTAGTAATGCTGCATCTTCTGCAGCAGGGAAAGTCTCAGTTCCATCTGGTGCTGTTTCAGCTGTCTTTCATAGTTCCATGCCTTATGATACGCAGAATGCACAGTTGAAGGTTCAGGCCCTGGAATACTTATTAGTTTATACTCCTTCTGGGCATTTGGTTCAGTATAAACTACTTCCTTCAATGGCAGCAGAGACAAGTGAAACTGCTCCAGCAACAGCCCCAGCTCCTTCAACACAGATACAAGAAGAGGATTTGCGAGTGAAAGTTGAACCCATTCAATGGTGGGATGTCTGTAGGAGAAATGATTGGCCAGAAAGAGAAGAATATAGGTCAGGAAAAAATCTCGATGGTCAAGAAGCTGAGGAAATAAGCTTGGAGAATTCAGATTATGAATATGATGATGTTGCCAACAATAATTCTATAAAATGCTATGAGCAATGTCACTTCTCAAATGCGGAGGTGCAGATAAACTCTGGGAGGGTACCAATTCGGCAGAAGTCTGAGGTGTCTTTCTATGCGATTAGTCCTTTGGAGGTGAAGGAGCATAATTTATGTGATGGTAATCAAACAAGCGGAGAGATTGAAATTGAGAAGATTCCTATTACAGAGATTGAAATAAGACAGAAAGATTTGTTGCCTGTCTTTAATCATTTTCATGGAATTCATTCGCCTTGGGGTGACAGAGGTGTTATTATGGGTAGATTCTCAAGTTCTTCATCTGATTCGCCTGGGGTTGAAGAGAAGTTGTCAGAAGATGCCGTAATAAACCATTCAAAGTTAATGGTTCCCAGCTCGTCTGAAAAGCCAGATGGTGGGTTGTCAGCATGTTTTGCTTCATCAAATGACTTGTCTAGTAATGAGACTGATTGCAAGAGCAGAGAGGATGCTACGTTGGCATCACCTGTTTTAAGGCAAGAAATGGTTTTCGGGGAAGATGTTTCAATTGGCGCCTCACATTTTGCTGATAGTGTAAAAACAGTAGCTAAACTCTCAGAGAGTACCAGAACCAGTGATGATTTGAATTCGAGTTTAGATGGTTATAATTTTAACACGAACGATGTTGATGGGGAGCCTGTACATGACTCACCTGACTTTCCGCAATTTTTTCAAGAGGGATATTGTAAAGCAGCAGATGAATGTCACGAAGCAACAGAAGTTGTTAATGATGTTGACTGTGGCAGGCAGAAGCCTGGGGACAACGATGATGATGACATGCTTGGTTGTGTATTTGACTTCTCCGAAGAAGGTTGA 2835 0.4321 MKNHAKENNSKSNGFIPSSFKFISSCIKTASSGVLSAGASVAASIYADGHDRKDQVLWACFDRLELGPTSFKHVLLLGYSNGFQVLDVDDASNVRELVSKRDDPVSFLQMQPIPTKAEGCKGFSASHPLLLVVACDKSKIPGTMQNGRDGYTEPQAENIISSATSVRFYSLRSYSYVHALRFRSTVYMVRCSPQIVAVGLAAQIYCFDALTLENKFSVLTYPVPQLGVQGMVGVNIGYGPMAVGSRWLAYASINPLPSNAGRLSPQSLTPPAVSPSSSPGNGNLVARYAMESSKHLAAGLINLGDMGYKTLSKYYQDLIPDGSSSPVSSNSSWKVSRYTPHSTEADAAGVVAIKDLVSRAVVAQFRAHTSPISALSFDPSGTLLVTTSIHGNNINIFRIMPSCSRNGSGFQSSDWSCSHAHLYKLHRGMTSAVIQDICFSHYSQWVAIISSKGTCHIFVLAPFGGETVLQIQNPDTERLTFLPTFSLPWWFTPHFTVNQQQFSPPPPPVTLSVVSRIKNSNAGWLNTVSNAASSAAGKVSVPSGAVSAVFHSSMPYDTQNAQLKVQALEYLLVYTPSGHLVQYKLLPSMAAETSETAPATAPAPSTQIQEEDLRVKVEPIQWWDVCRRNDWPEREEYRSGKNLDGQEAEEISLENSDYEYDDVANNNSIKCYEQCHFSNAEVQINSGRVPIRQKSEVSFYAISPLEVKEHNLCDGNQTSGEIEIEKIPITEIEIRQKDLLPVFNHFHGIHSPWGDRGVIMGRFSSSSSDSPGVEEKLSEDAVINHSKLMVPSSSEKPDGGLSACFASSNDLSSNETDCKSREDATLASPVLRQEMVFGEDVSIGASHFADSVKTVAKLSESTRTSDDLNSSLDGYNFNTNDVDGEPVHDSPDFPQFFQEGYCKAADECHEATEVVNDVDCGRQKPGDNDDDDMLGCVFDFSEEG 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2308 944 FunFam Autophagy-related protein 18h 41 476 - -
Lele13g2308 944 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 7 925 IPR045142 GO:0006914
Lele13g2308 944 SUPERFAMILY WD40 repeat-like 73 458 IPR036322 GO:0005515
Lele13g2308 944 Pfam Breast carcinoma amplified sequence 3 506 741 IPR022175 -
Lele13g2308 944 Gene3D - 43 485 IPR015943 GO:0005515
Lele13g2308 944 SMART WD40_4 416 459 IPR001680 GO:0005515
Lele13g2308 944 SMART WD40_4 358 398 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2308 Lele-ChrLele13 29015305 29020492 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2308 13 29015305 29020492 Lele13g2316 13 29072845 29079038 CCT
Lele13g2308 13 29015305 29020492 Lele14g2251 14 27423399 27428485 CCT
Lele13g2308 13 29015305 29020492 Lele15g0097 15 591748 595288 CCT
Lele13g2308 13 29015305 29020492 Lele16g0104 16 635962 641474 CCT
Lele13g2308 13 29015305 29020492 Lele15g0106 15 637658 642832 hybridization
Lele13g2308 13 29015305 29020492 Lele16g0116 16 703374 706595 hybridization