Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2295 ATGTGTCTCCCTGAGGGAGAGAGAGACAGCCAGACTTCCATGGCGCTGGAGGCCGTTGTTTTCCCTCCAGACTACCCATTTGGCTATGGCGCCTCCAGAGACCCTTTTCTTCTCTGGCCCTTTCCCGACGATTTCACCCTTGCCAAGCAGGAAGACCACCACAACGCCTTTCCGAATTTTGTCGGCAACCACACGGAAAATTATGGCTTCGGAGACTGGTCTAATATCTGCTCTTCTTCTCCCCCGTCGTCAGTAGTGTTGCCCCACTCGAGTGAACTGCATCTCCCGAATCAAGCGACCTCTGACACCAGTAACAACCCAACGCCCTCCTCTGAAGCCCTCAACGTGGATTCCTCGAATTCTCGTCTCAAGAGACGCAGGGCCAGGACCCGGAAGAACAAGGAGGAGATCGAGAACCAGAGAATGACGCACATTGCGGTGGAGCGCAATCGGAGAAAGCAGATGAACGAGTACCTCTCTGTTCTTCGCTCTCTCATGCCCGACTCCTACGTCCAGAGGGGCGATCAAGCTTCCATAGTAGGAGGGGCTATTAACTTTGTGAAGGAGCTGGAGCAGAGGCTGCAATACATGGGGGGTCAGAAAGAAACAGAGGCGAAATGTGAGAGCAAGCCGTTTTCGGAGTTCTTCACGTTTCCTCAGTACTCGACCAGCCCGAATGGAAGCGGCGAGTGTTCGGCGGCGACGGGGGAGAAAGTGGGGGAGGTATCGTCGGAGGCGTGCATCGCGGATATAGAGGTGACGATGGTGGAGAGTCATGCGAATCTGAAAATAAGGTCGAAGAAGAGGCCGAGGCAGCTGTTGAAGATGGTGTCGGCGTTGTACAGCATGCGCCTCACTATCTTGCATCTCAATGTGACGACCACCACGGATATCGTGCTCTACTGCATCAGCGTCAAGCAGGAAGAAGAGTGCAAGCTGGGATCAGTGGAGGAGATAGCGGGAGCAGTGTACAAAACGTTGGAGAGGATCGAACAAGAGTGTGTGCAGAATAATGAAGATCCGAACACGAGCTAG 1035 0.5391 MCLPEGERDSQTSMALEAVVFPPDYPFGYGASRDPFLLWPFPDDFTLAKQEDHHNAFPNFVGNHTENYGFGDWSNICSSSPPSSVVLPHSSELHLPNQATSDTSNNPTPSSEALNVDSSNSRLKRRRARTRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIVGGAINFVKELEQRLQYMGGQKETEAKCESKPFSEFFTFPQYSTSPNGSGECSAATGEKVGEVSSEACIADIEVTMVESHANLKIRSKKRPRQLLKMVSALYSMRLTILHLNVTTTTDIVLYCISVKQEEECKLGSVEEIAGAVYKTLERIEQECVQNNEDPNTS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2295 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 190 IPR011598 GO:0046983
Lele13g2295 344 Gene3D - 129 211 IPR036638 GO:0046983
Lele13g2295 344 MobiDBLite consensus disorder prediction 95 133 - -
Lele13g2295 344 Coils Coil 120 140 - -
Lele13g2295 344 SMART finulus 145 196 IPR011598 GO:0046983
Lele13g2295 344 CDD bHLH_AtFAMA_like 142 210 - -
Lele13g2295 344 MobiDBLite consensus disorder prediction 95 118 - -
Lele13g2295 344 PANTHER MAX DIMERIZATION, MAD 79 333 - -
Lele13g2295 344 Pfam Helix-loop-helix DNA-binding domain 140 191 IPR011598 GO:0046983
Lele13g2295 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 203 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2295 Lele-ChrLele13 28942694 28943922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2295 14 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 49.842 6.03e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele13g2295 HLH 3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2285 13 28889292 28892007 Lele13g2295 13 28942694 28943922 CCT
Lele15g0128 15 768910 771646 Lele13g2295 13 28942694 28943922 CCT
Lele16g0137 16 800766 803188 Lele13g2295 13 28942694 28943922 CCT
Lele13g2295 13 28942694 28943922 Lele13g2295 13 28942694 28943922 ECH
Lele13g2295 13 28942694 28943922 Lele15g0118 15 718688 719917 hybridization
Lele13g2295 13 28942694 28943922 Lele16g0129 16 759080 760324 hybridization