Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2294 ATGCCTCTCTTGCTCCTCCTCCTCCTCCTCCTCCTCCCTCCGCCATTCCCCCTCGCCTGCGCCCAGGTCGGCAACACCGGTCCCACCGGCCCTTCCTACAACTCCTACTCCCCCTCCATCGCCATCATCATCGTCATTTTAGTCGCCGCTCTCTTCCTCACCGGCTTCTTCTCCATCTATATCCGCCACTGCGCCCAACCATCCAACTCCCCTCTCCCCAACCTTGCTGCTCGCTCCAGACGCCCGCCTCGCGGTCTTGATCCCACCGTCATCCGCTCTTTCCCCACTCTTGACTACTCCGCCGTTAAGTTCCACAAGATTGGGAAAGATGCCCTCGAATGCGCCGTCTGCTTGAACGAGTTCGAGGACTCTGAAACACTCCGTCTCATACCCAAGTGCGACCACGTCTTCCATCCCGAATGCATCGACGAGTGGTTGGCCTCCCACACCACCTGCCCCGTTTGCAGAGCCGACCTCATCCCTCAACCGGGCGACTCCGTTGATCATGCAGTTCCAGTGCTTGACTCTCACGCTGACATTGAATCCCAAAACGACGCTCGGGAACATCCGGAAGGTGACTGTGAAGCCGCCGAGCCCGACGTTATGCGTTCCAATCAGAAGCTTAACCGAAGCCGTACGCGAGGTTCTCGGTCGAGTCAGACGGTGTGGTGGGCAAGGTCCCACTCGACTGGGCACTCCCTTCTCCAGCCGGGAGAAAACACCGACAGGTATACTTTGAGACTGCCGGCGGACGTGAGGAACCGGCTGCTGAATCAGAAATTTCATCGGGCCACGAGCTTGGTAATCTTGCCCGGGGAGAGTAGTTCGAGGAGGGGGTATCGAACCGGAGGTGAGGGGAGTAGCAGGGGAAGGTTTTCGAGGCGACTGAGCCGCGGGTTTAAATCAGACCGATGGGTTTTCACGATGGCGCCGCCCTTCTTAGTGAGGGCGTCATCGATCAGGTCTCCGAAGGTGGCTAGTGACGGTGCCGCCGTTGAAGAGACCTCCTCCGACCCCATTATGCCACCATCGGCCTTGGACTCGTCCCGACCACCGGTTTAG 1062 0.5923 MPLLLLLLLLLLPPPFPLACAQVGNTGPTGPSYNSYSPSIAIIIVILVAALFLTGFFSIYIRHCAQPSNSPLPNLAARSRRPPRGLDPTVIRSFPTLDYSAVKFHKIGKDALECAVCLNEFEDSETLRLIPKCDHVFHPECIDEWLASHTTCPVCRADLIPQPGDSVDHAVPVLDSHADIESQNDAREHPEGDCEAAEPDVMRSNQKLNRSRTRGSRSSQTVWWARSHSTGHSLLQPGENTDRYTLRLPADVRNRLLNQKFHRATSLVILPGESSSRRGYRTGGEGSSRGRFSRRLSRGFKSDRWVFTMAPPFLVRASSIRSPKVASDGAAVEETSSDPIMPPSALDSSRPPV 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2294 353 MobiDBLite consensus disorder prediction 321 353 - -
Lele13g2294 353 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Lele13g2294 353 MobiDBLite consensus disorder prediction 181 200 - -
Lele13g2294 353 CDD RING-H2_EL5_like 113 156 - -
Lele13g2294 353 FunFam E3 ubiquitin-protein ligase ATL6 74 162 - -
Lele13g2294 353 SMART ring_2 114 155 IPR001841 -
Lele13g2294 353 Pfam Ring finger domain 113 156 IPR001841 -
Lele13g2294 353 SUPERFAMILY RING/U-box 108 163 - -
Lele13g2294 353 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 210 - -
Lele13g2294 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 161 IPR013083 -
Lele13g2294 353 MobiDBLite consensus disorder prediction 181 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2294 Lele-ChrLele13 28928098 28929159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g2294 4 330 Rapid Response to Elicitors AT3G05200 44.807 1.00e-79 247